HL_8ZEJ_050

3D structure

PDB id

8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

8ZEJ|1|b|A|196, 8ZEJ|1|b|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZEJ_050 not in the Motif Atlas

Geometric match to HL_8CRE_001

Geometric discrepancy: 0.0869

The information below is about HL_8CRE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8ZEJ|1|b|G|194
8ZEJ|1|b|A|195
8ZEJ|1|b|A|196
8ZEJ|1|b|A|197
8ZEJ|1|b|C|198
8ZEJ|1|b|A|199
8ZEJ|1|b|U|200
8ZEJ|1|b|C|201

Current chains

Chain b

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L28

Chain X

Transfer RNA; tRNA

Chain m

50S ribosomal protein L15