HL_8ZEJ_070

3D structure

PDB id

8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

8ZEJ|1|b|U|958, 8ZEJ|1|b|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZEJ_070 not in the Motif Atlas

Geometric match to HL_7A0S_026

Geometric discrepancy: 0.13

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8ZEJ|1|b|U|955
8ZEJ|1|b|G|956
8ZEJ|1|b|C|957
8ZEJ|1|b|U|958
8ZEJ|1|b|A|959
8ZEJ|1|b|A|960
8ZEJ|1|b|C|961
8ZEJ|1|b|G|962

Current chains

Chain b

23S rRNA

Nearby chains

Chain a

5S ribosomal RNA; 5S rRNA

Chain n

50S ribosomal protein L16