HL_8ZEJ_071

3D structure

PDB id

8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZEJ_071 not in the Motif Atlas

Geometric match to HL_4WF9_028

Geometric discrepancy: 0.1473

The information below is about HL_4WF9_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8ZEJ|1|b|G|978
8ZEJ|1|b|A|979
8ZEJ|1|b|A|980
8ZEJ|1|b|A|981
8ZEJ|1|b|C|982
8ZEJ|1|b|A|983
8ZEJ|1|b|A|984
8ZEJ|1|b|C|985

Current chains

Chain b

23S rRNA

Nearby chains

Chain r

50S ribosomal protein L20