HL_8ZEJ_079

3D structure

PDB id

8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

8ZEJ|1|b|U|1396, 8ZEJ|1|b|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZEJ_079 not in the Motif Atlas

Geometric match to HL_5J7L_168

Geometric discrepancy: 0.1574

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8ZEJ|1|b|G|1389
8ZEJ|1|b|U|1390
8ZEJ|1|b|U|1391
8ZEJ|1|b|A|1392
8ZEJ|1|b|A|1393
8ZEJ|1|b|U|1394
8ZEJ|1|b|A|1395
8ZEJ|1|b|U|1396
8ZEJ|1|b|U|1397
8ZEJ|1|b|C|1398

Current chains

Chain b

23S rRNA

Nearby chains

Chain u

50S ribosomal protein L23