HL_8ZEJ_095

3D structure

PDB id

8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CGCCAG

Length

6 nucleotides

Bulged bases

8ZEJ|1|b|C|2145

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZEJ_095 not in the Motif Atlas

Geometric match to HL_9DFE_006

Geometric discrepancy: 0.285

The information below is about HL_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

8ZEJ|1|b|C|2143
8ZEJ|1|b|G|2144
8ZEJ|1|b|C|2145
8ZEJ|1|b|C|2146
8ZEJ|1|b|A|2147
8ZEJ|1|b|G|2148

Current chains

Chain b

23S rRNA

Nearby chains

Chain K

Small ribosomal subunit protein uS11