HL_8ZEJ_108

3D structure

PDB id

8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZEJ_108 not in the Motif Atlas

Geometric match to HL_8Z8U_001

Geometric discrepancy: 0.082

The information below is about HL_8Z8U_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8ZEJ|1|b|C|2658
8ZEJ|1|b|G|2659
8ZEJ|1|b|A|2660
8ZEJ|1|b|G|2661
8ZEJ|1|b|A|2662
8ZEJ|1|b|G|2663

Current chains

Chain b

23S rRNA

Nearby chains

Chain g

50S ribosomal protein L6