HL_8ZEJ_109

3D structure

PDB id

8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

UGCCAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZEJ_109 not in the Motif Atlas

Geometric match to HL_7A0S_064

Geometric discrepancy: 0.1453

The information below is about HL_7A0S_064

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_12125.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

14

Unit IDs

8ZEJ|1|b|U|2701
8ZEJ|1|b|G|2702
8ZEJ|1|b|C|2703
8ZEJ|1|b|C|2704
8ZEJ|1|b|A|2705
8ZEJ|1|b|A|2706

Current chains

Chain b

23S rRNA

Nearby chains

Chain o

50S ribosomal protein L17