HL_8ZFF_041

3D structure

PDB id

8ZFF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

8ZFF|1|a|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFF_041 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1121

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8ZFF|1|a|C|305
8ZFF|1|a|U|306
8ZFF|1|a|G|307
8ZFF|1|a|G|308
8ZFF|1|a|A|309
8ZFF|1|a|A|310
8ZFF|1|a|A|311
8ZFF|1|a|G|312

Current chains

Chain a

23S rRNA

Nearby chains

Chain t

Large ribosomal subunit protein uL24