HL_8ZFF_043

3D structure

PDB id

8ZFF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

8ZFF|1|a|G|329, 8ZFF|1|a|A|330, 8ZFF|1|a|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFF_043 not in the Motif Atlas

Homologous match to HL_7A0S_012

Geometric discrepancy: 0.3676

The information below is about HL_7A0S_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.4

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

16

Unit IDs

8ZFF|1|a|G|327
8ZFF|1|a|U|328
8ZFF|1|a|G|329
8ZFF|1|a|A|330
8ZFF|1|a|C|331
8ZFF|1|a|A|332
8ZFF|1|a|G|333
8ZFF|1|a|C|334
8ZFF|1|a|C|335

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24