HL_8ZFF_045

3D structure

PDB id

8ZFF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

8ZFF|1|a|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFF_045 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.0914

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8ZFF|1|a|G|410
8ZFF|1|a|G|411
8ZFF|1|a|A|412
8ZFF|1|a|C|413
8ZFF|1|a|C|414
8ZFF|1|a|A|415
8ZFF|1|a|U|416
8ZFF|1|a|C|417

Current chains

Chain a

23S rRNA

Nearby chains