HL_8ZFF_064

3D structure

PDB id

8ZFF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

8ZFF|1|a|U|1396, 8ZFF|1|a|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFF_064 not in the Motif Atlas

Homologous match to HL_7A0S_035

Geometric discrepancy: 0.3486

The information below is about HL_7A0S_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

8ZFF|1|a|G|1389
8ZFF|1|a|U|1390
8ZFF|1|a|U|1391
8ZFF|1|a|A|1392
8ZFF|1|a|A|1393
8ZFF|1|a|U|1394
8ZFF|1|a|A|1395
8ZFF|1|a|U|1396
8ZFF|1|a|U|1397
8ZFF|1|a|C|1398

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

Large ribosomal subunit protein uL23