HL_8ZFF_077

3D structure

PDB id

8ZFF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

G(PSU)AAC(3TD)A(PSU)AAC

Length

11 nucleotides

Bulged bases

8ZFF|1|a|A|1913

QA status

Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFF_077 not in the Motif Atlas

Geometric match to HL_8OI5_044

Geometric discrepancy: 0.1201

The information below is about HL_8OI5_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82185.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8ZFF|1|a|G|1910
8ZFF|1|a|PSU|1911
8ZFF|1|a|A|1912
8ZFF|1|a|A|1913
8ZFF|1|a|C|1914
8ZFF|1|a|3TD|1915
8ZFF|1|a|A|1916
8ZFF|1|a|PSU|1917
8ZFF|1|a|A|1918
8ZFF|1|a|A|1919
8ZFF|1|a|C|1920

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain Z

Transfer RNA; tRNA