HL_8ZFF_087

3D structure

PDB id

8ZFF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

8ZFF|1|a|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFF_087 not in the Motif Atlas

Homologous match to HL_7A0S_058

Geometric discrepancy: 0.185

The information below is about HL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8ZFF|1|a|U|2404
8ZFF|1|a|G|2405
8ZFF|1|a|A|2406
8ZFF|1|a|A|2407
8ZFF|1|a|U|2408
8ZFF|1|a|G|2409
8ZFF|1|a|G|2410
8ZFF|1|a|A|2411
8ZFF|1|a|A|2412
8ZFF|1|a|G|2413

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

Large ribosomal subunit protein uL15