HL_8ZFG_038

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

8ZFG|1|a|A|196, 8ZFG|1|a|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFG_038 not in the Motif Atlas

Homologous match to HL_7A0S_006

Geometric discrepancy: 0.1019

The information below is about HL_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8ZFG|1|a|G|194
8ZFG|1|a|A|195
8ZFG|1|a|A|196
8ZFG|1|a|A|197
8ZFG|1|a|C|198
8ZFG|1|a|A|199
8ZFG|1|a|U|200
8ZFG|1|a|C|201

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

Large ribosomal subunit protein uL15

Chain w

Large ribosomal subunit protein bL28