HL_8ZFG_065

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

8ZFG|1|a|A|1453, 8ZFG|1|a|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFG_065 not in the Motif Atlas

Geometric match to HL_8B0X_064

Geometric discrepancy: 0.0498

The information below is about HL_8B0X_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_00557.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8ZFG|1|a|C|1451
8ZFG|1|a|G|1452
8ZFG|1|a|A|1453
8ZFG|1|a|C|1454
8ZFG|1|a|G|1455
8ZFG|1|a|G|1456
8ZFG|1|a|U|1457
8ZFG|1|a|U|1458
8ZFG|1|a|G|1459

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

Large ribosomal subunit protein bL17