HL_8ZFG_069

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

CGACAC(6MZ)G

Length

8 nucleotides

Bulged bases

8ZFG|1|a|A|1614, 8ZFG|1|a|A|1616, 8ZFG|1|a|6MZ|1618

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFG_069 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.1133

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

12

Unit IDs

8ZFG|1|a|C|1612
8ZFG|1|a|G|1613
8ZFG|1|a|A|1614
8ZFG|1|a|C|1615
8ZFG|1|a|A|1616
8ZFG|1|a|C|1617
8ZFG|1|a|6MZ|1618
8ZFG|1|a|G|1619

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain r

Large ribosomal subunit protein uL22