HL_8ZFI_006

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

8ZFI|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFI_006 not in the Motif Atlas

Geometric match to HL_5J7L_006

Geometric discrepancy: 0.3346

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8ZFI|1|A|G|259
8ZFI|1|A|G|260
8ZFI|1|A|U|261
8ZFI|1|A|A|262
8ZFI|1|A|A|263
8ZFI|1|A|C|264
8ZFI|1|A|G|265
8ZFI|1|A|G|266
8ZFI|1|A|C|267

Current chains

Chain A

16S rRNA

Nearby chains

Chain Q

30S ribosomal protein S17

Chain T

30S ribosomal protein S20