HL_8ZFI_009

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

8ZFI|1|A|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFI_009 not in the Motif Atlas

Geometric match to HL_8P9A_154

Geometric discrepancy: 0.1253

The information below is about HL_8P9A_154

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

8ZFI|1|A|C|342
8ZFI|1|A|U|343
8ZFI|1|A|A|344
8ZFI|1|A|C|345
8ZFI|1|A|G|346
8ZFI|1|A|G|347

Current chains

Chain A

16S rRNA

Nearby chains

Chain l

50S ribosomal protein L14

Chain q

50S ribosomal protein L19