HL_8ZFI_013

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFI_013 not in the Motif Atlas

Geometric match to HL_5J7L_205

Geometric discrepancy: 0.2325

The information below is about HL_5J7L_205

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8ZFI|1|A|C|522
8ZFI|1|A|A|523
8ZFI|1|A|G|524
8ZFI|1|A|C|525
8ZFI|1|A|C|526
8ZFI|1|A|G|527

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12