HL_8ZFI_020

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFI_020 not in the Motif Atlas

Geometric match to HL_8CRE_215

Geometric discrepancy: 0.0913

The information below is about HL_8CRE_215

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8ZFI|1|A|C|897
8ZFI|1|A|G|898
8ZFI|1|A|C|899
8ZFI|1|A|A|900
8ZFI|1|A|A|901
8ZFI|1|A|G|902

Current chains

Chain A

16S rRNA

Nearby chains

Chain b

Large subunit ribosomal RNA; LSU rRNA