HL_8ZFI_052

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

8ZFI|1|b|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFI_052 not in the Motif Atlas

Geometric match to HL_7A0S_010

Geometric discrepancy: 0.1424

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8ZFI|1|b|C|305
8ZFI|1|b|U|306
8ZFI|1|b|G|307
8ZFI|1|b|G|308
8ZFI|1|b|A|309
8ZFI|1|b|A|310
8ZFI|1|b|A|311
8ZFI|1|b|G|312

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain v

50S ribosomal protein L24