HL_8ZFI_056

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

8ZFI|1|b|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFI_056 not in the Motif Atlas

Geometric match to HL_7A0S_014

Geometric discrepancy: 0.1592

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8ZFI|1|b|G|410
8ZFI|1|b|G|411
8ZFI|1|b|A|412
8ZFI|1|b|C|413
8ZFI|1|b|C|414
8ZFI|1|b|A|415
8ZFI|1|b|U|416
8ZFI|1|b|C|417

Current chains

Chain b

RNA (2903-MER)

Nearby chains