HL_8ZFI_079
3D structure
- PDB id
- 8ZFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGACGGUUG
- Length
- 9 nucleotides
- Bulged bases
- 8ZFI|1|b|G|1452, 8ZFI|1|b|A|1453, 8ZFI|1|b|C|1454
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ZFI_079 not in the Motif Atlas
- Geometric match to HL_5J7L_169
- Geometric discrepancy: 0.216
- The information below is about HL_5J7L_169
- Detailed Annotation
- Mini UNCG with extended bulge
- Broad Annotation
- Mini UNCG with extended bulge
- Motif group
- HL_22622.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8ZFI|1|b|C|1451
8ZFI|1|b|G|1452
8ZFI|1|b|A|1453
8ZFI|1|b|C|1454
8ZFI|1|b|G|1455
8ZFI|1|b|G|1456
8ZFI|1|b|U|1457
8ZFI|1|b|U|1458
8ZFI|1|b|G|1459
Current chains
- Chain b
- RNA (2903-MER)
Nearby chains
- Chain o
- 50S ribosomal protein L17
Coloring options: