HL_8ZFI_089

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

8ZFI|1|b|A|1808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFI_089 not in the Motif Atlas

Geometric match to HL_3OXE_002

Geometric discrepancy: 0.1336

The information below is about HL_3OXE_002

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37569.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

8ZFI|1|b|C|1806
8ZFI|1|b|G|1807
8ZFI|1|b|A|1808
8ZFI|1|b|A|1809
8ZFI|1|b|A|1810
8ZFI|1|b|G|1811

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain 0

50S ribosomal protein L28

Chain c

50S ribosomal protein L2