HL_8ZFI_099

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZFI_099 not in the Motif Atlas

Geometric match to HL_5J7L_189

Geometric discrepancy: 0.1701

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

8ZFI|1|b|U|2324
8ZFI|1|b|G|2325
8ZFI|1|b|C|2326
8ZFI|1|b|A|2327
8ZFI|1|b|A|2328
8ZFI|1|b|U|2329
8ZFI|1|b|G|2330
8ZFI|1|b|G|2331

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain y

50S ribosomal protein L27