HL_8ZGR_014

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

8ZGR|1|LA|C|647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGR_014 not in the Motif Atlas

Homologous match to HL_8CRE_013

Geometric discrepancy: 0.0748

The information below is about HL_8CRE_013

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8ZGR|1|LA|U|639
8ZGR|1|LA|C|640
8ZGR|1|LA|U|641
8ZGR|1|LA|U|642
8ZGR|1|LA|G|643
8ZGR|1|LA|A|644
8ZGR|1|LA|A|645
8ZGR|1|LA|A|646
8ZGR|1|LA|C|647
8ZGR|1|LA|A|648

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LE

Large ribosomal subunit protein uL3

Chain Lc

Large ribosomal subunit protein uL15

Chain Lg

Large ribosomal subunit protein eL32