8ZGR Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8ZGR_001 | 1/LA/38:45 | No text annotation | homologous HL_8CRE_001 NA | |
| HL_8ZGR_002 | 1/LA/69:74 | No text annotation | homologous HL_8CRE_002 NA | |
| HL_8ZGR_003 | 1/LA/90:96 | No text annotation | homologous HL_8CRE_003 NA | |
| HL_8ZGR_004 | 1/LA/132:136 | No text annotation | homologous HL_8CRE_004 NA | |
| HL_8ZGR_005 | 1/LA/194:201 | T-loop with 1 bulged base | homologous HL_8P9A_117 HL_13999.1 | |
| HL_8ZGR_006 | 1/LA/208:212 | No text annotation | geometric HL_7A0S_011 HL_75660.6 | |
| HL_8ZGR_007 | 1/LA/216:224 | T-loop with unstacked turn | homologous HL_8CRE_007 NA | |
| HL_8ZGR_008 | 1/LA/278:287 | T-loop related | homologous HL_8CRE_008 NA | |
| HL_8ZGR_009 | 1/LA/303:312 | No text annotation | homologous HL_8P9A_121 HL_00911.1 | |
| HL_8ZGR_010 | 1/LA/357:362 | GNRA | homologous HL_8CRE_010 NA | |
| HL_8ZGR_011 | 1/LA/382:387 | GNRA | homologous HL_8CRE_011 NA | |
| HL_8ZGR_013 | 1/LA/598:603 | No text annotation | ||
| HL_8ZGR_014 | 1/LA/639:648 | T-loop with 2 stacked bulged bases | homologous HL_8CRE_013 NA | |
| HL_8ZGR_015 | 1/LA/686:692 | No text annotation | geometric HL_361D_002 NA | |
| HL_8ZGR_016 | 1/LA/706:711 | GNRA | homologous HL_8CRE_015 NA | |
| HL_8ZGR_018 | 1/LA/762:767 | No text annotation | ||
| HL_8ZGR_019 | 1/LA/843:848 | GNRA | homologous HL_8CRE_018 NA | |
| HL_8ZGR_020 | 1/LA/875:884 | No text annotation | homologous HL_8CRE_019 NA | |
| HL_8ZGR_021 | 1/LA/909:917 | No text annotation | homologous HL_8P9A_133 HL_79004.1 | |
| HL_8ZGR_022 | 1/LA/957:962 | No text annotation | homologous HL_8CRE_021 NA | |
| HL_8ZGR_024 | 1/LA/1075:1082 | T-loop related | homologous HL_8P9A_136 HL_63894.1 | |
| HL_8ZGR_025 | 1/LA/1125:1131 | GNRA | homologous HL_8CRE_024 NA | |
| HL_8ZGR_026 | 1/LA/1147:1154 | No text annotation | homologous HL_8CRE_025 NA | |
| HL_8ZGR_029 | 1/LA/1346:1356 | No text annotation | ||
| HL_8ZGR_030 | 1/LA/1402:1407 | GNRA | homologous HL_8CRE_029 NA | |
| HL_8ZGR_031 | 1/LA/1461:1469 | T-loop with 2 stacked bulged bases | homologous HL_8CRE_030 NA | |
| HL_8ZGR_032 | 1/LA/1505:1511 | Pseudoknot geometry with 3' bulge | homologous HL_8CRE_031 NA | |
| HL_8ZGR_033 | 1/LA/1543:1548 | GNRA variation | homologous HL_8CRE_032 NA | |
| HL_8ZGR_035 | 1/LA/1598:1607 | No text annotation | homologous HL_8P9A_146 HL_77449.1 | |
| HL_8ZGR_036 | 1/LA/1633:1638 | GNRA | homologous HL_8P9A_147 HL_34789.1 | |
| HL_8ZGR_037 | 1/LA/1679:1687 | Pseudoknot geometry | homologous HL_8CRE_036 NA | |
| HL_8ZGR_038 | 1/LA/1718:1724 | No text annotation | ||
| HL_8ZGR_040 | 1/LA/1791:1795 | No text annotation | homologous HL_8CRE_039 NA | |
| HL_8ZGR_041 | 1/LA/1843:1850 | No text annotation | homologous HL_8CRE_040 NA | |
| HL_8ZGR_042 | 1/LA/1861:1867 | GNRA | homologous HL_8P9A_153 HL_34789.1 | |
| HL_8ZGR_043 | 1/LA/1922:1927 | UNCG | homologous HL_8CRE_042 NA | |
| HL_8ZGR_044 | 1/LA/2109:2113 | No text annotation | homologous HL_8CRE_043 NA | |
| HL_8ZGR_045 | 1/LA/2134:2144 | No text annotation | homologous HL_8P9A_157 HL_87681.1 | |
| HL_8ZGR_046 | 1/LA/2163:2169 | GNRA | homologous HL_8CRE_045 NA | |
| HL_8ZGR_047 | 1/LA/2210:2233 | No text annotation | ||
| HL_8ZGR_048 | 1/LA/2252:2262 | No text annotation | homologous HL_8CRE_047 NA | |
| HL_8ZGR_049 | 1/LA/2291:2299 | No text annotation | homologous HL_8CRE_048 NA | |
| HL_8ZGR_050 | 1/LA/2368:2377 | No text annotation | homologous HL_8CRE_049 NA | |
| HL_8ZGR_052 | 1/LA/2567:2572 | No text annotation | ||
| HL_8ZGR_053 | 1/LA/2615:2623 | No text annotation | homologous HL_8P9A_165 HL_11974.1 | |
| HL_8ZGR_054 | 1/LA/2632:2644 | No text annotation | homologous HL_8P9A_166 HL_02042.1 | |
| HL_8ZGR_055 | 1/LA/2671:2681 | No text annotation | ||
| HL_8ZGR_056 | 1/LA/2692:2699 | Pseudoknot geometry | homologous HL_8P9A_168 HL_52651.1 | |
| HL_8ZGR_057 | 1/LA/2723:2731 | No text annotation | homologous HL_8CRE_057 NA | |
| HL_8ZGR_058 | 1/LA/2743:2748 | GNRA | homologous HL_8CRE_058 NA | |
| HL_8ZGR_059 | 1/LA/2775:2783 | Pseudoknot geometry | homologous HL_8CRE_059 NA | |
| HL_8ZGR_060 | 1/LA/2839:2847 | No text annotation | ||
| HL_8ZGR_061 | 1/LA/2896:2903 | GNRA variation | homologous HL_8P9A_173 HL_46665.1 | |
| HL_8ZGR_062 | 1/LA/2919:2925 | No text annotation | homologous HL_8P9A_174 HL_48677.1 | |
| HL_8ZGR_063 | 1/LA/2962:2967 | GNRA | homologous HL_8P9A_175 HL_34789.1 | |
| HL_8ZGR_064 | 1/LA/3024:3029 | GNRA | homologous HL_8CRE_064 NA | |
| HL_8ZGR_065 | 1/LA/3067:3072 | No text annotation | homologous HL_8P9A_177 HL_12125.1 | |
| HL_8ZGR_066 | 1/LA/3109:3123 | No text annotation | homologous HL_8CRE_066 NA | |
| HL_8ZGR_067 | 1/LA/3193:3196 | No text annotation | geometric HL_8CRE_004 NA | |
| HL_8ZGR_068 | 1/LA/3239:3246 | No text annotation | homologous HL_8CRE_068 NA | |
| HL_8ZGR_069 | 1/LA/3302:3310 | No text annotation | homologous HL_8CRE_069 NA | |
| HL_8ZGR_071 | 1/LB/36:41 | No text annotation | homologous HL_8OI5_069 HL_59381.1 | |
| HL_8ZGR_072 | 1/LB/88:93 | GNRA | homologous HL_8OI5_070 HL_34789.1 | |
| HL_8ZGR_073 | 1/LC/47:56 | No text annotation | homologous HL_8P9A_186 HL_17803.1 | |
| HL_8ZGR_074 | 1/LC/69:89 | No text annotation | homologous HL_8P9A_187 HL_68571.1 | |
| HL_8ZGR_075 | 1/LC/108:114 | No text annotation | homologous HL_8P9A_188 HL_13184.1 | |
| HL_8ZGR_076 | 1/LC/124:129 | No text annotation | homologous HL_8CRE_077 NA | |
| HL_8ZGR_077 | 1/S2/7:17 | No text annotation | geometric HL_8CRE_191 HL_31940.1 | |
| HL_8ZGR_079 | 1/S2/153:161 | No text annotation | ||
| HL_8ZGR_082 | 1/S2/243:250 | No text annotation | ||
| HL_8ZGR_084 | 1/S2/330:338 | No text annotation | geometric HL_8CRE_198 HL_36455.1 | |
| HL_8ZGR_085 | 1/S2/366:375 | No text annotation | ||
| HL_8ZGR_086 | 1/S2/393:404 | No text annotation | geometric HL_8CRE_200 HL_86432.1 | |
| HL_8ZGR_087 | 1/S2/414:419 | No text annotation | ||
| HL_8ZGR_088 | 1/S2/450:456 | No text annotation | geometric HL_8Y0B_001 HL_69752.3 | |
| HL_8ZGR_090 | 1/S2/517:535 | No text annotation | ||
| HL_8ZGR_091 | 1/S2/569:574 | No text annotation | geometric HL_8CRE_205 HL_93535.2 | |
| HL_8ZGR_092 | 1/S2/764:772 | No text annotation | geometric HL_8CRE_207 HL_11974.1 | |
| HL_8ZGR_096 | 1/S2/937:942 | GNRA | geometric HL_8CRE_211 HL_34789.1 | |
| HL_8ZGR_097 | 1/S2/997:1007 | No text annotation | ||
| HL_8ZGR_099 | 1/S2/1084:1089 | GNRA | geometric HL_8P9A_213 HL_34789.1 | |
| HL_8ZGR_100 | 1/S2/1121:1126 | GNRA | geometric HL_8P9A_214 HL_34789.1 | |
| HL_8ZGR_101 | 1/S2/1188:1197 | No text annotation | geometric HL_8P9A_215 HL_97521.1 | |
| HL_8ZGR_103 | 1/S2/1296:1301 | GNRA | geometric HL_8CRE_218 HL_34789.1 | |
| HL_8ZGR_104 | 1/S2/1309:1316 | No text annotation | ||
| HL_8ZGR_108 | 1/S2/1550:1561 | No text annotation | ||
| HL_8ZGR_111 | 1/S2/1778:1783 | GNRA | geometric HL_5J7L_031 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8ZGR_012 | No text annotation | ||
| HL_8ZGR_017 | Mini UNCG | ||
| HL_8ZGR_023 | No text annotation | ||
| HL_8ZGR_027 | No text annotation | ||
| HL_8ZGR_028 | No text annotation | ||
| HL_8ZGR_034 | No text annotation | ||
| HL_8ZGR_039 | No text annotation | ||
| HL_8ZGR_051 | No text annotation | ||
| HL_8ZGR_070 | Mini UNCG related | ||
| HL_8ZGR_078 | No text annotation | ||
| HL_8ZGR_080 | No text annotation | ||
| HL_8ZGR_081 | No text annotation | ||
| HL_8ZGR_083 | No text annotation | ||
| HL_8ZGR_089 | No text annotation | ||
| HL_8ZGR_093 | No text annotation | ||
| HL_8ZGR_094 | No text annotation | ||
| HL_8ZGR_095 | No text annotation | ||
| HL_8ZGR_098 | No text annotation | ||
| HL_8ZGR_102 | No text annotation | ||
| HL_8ZGR_105 | No text annotation | ||
| HL_8ZGR_106 | No text annotation | ||
| HL_8ZGR_107 | No text annotation | ||
| HL_8ZGR_109 | No text annotation | ||
| HL_8ZGR_110 | No text annotation | ||
| HL_8ZGR_112 | No text annotation | ||
| HL_8ZGR_113 | No text annotation | ||
| HL_8ZGR_114 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8ZGR_001 | 1/LA/7:8, 1/LC/150:152 | Single bulged C | homologous IL_8P9A_231 IL_05642.1 | |
| IL_8ZGR_002 | 1/LA/13:15, 1/LC/144:145 | Single bulged U | homologous IL_8P9A_232 IL_97561.1 | |
| IL_8ZGR_003 | 1/LA/27:28, 1/LA/56:58 | Single stack bend | homologous IL_8CRE_004 NA | |
| IL_8ZGR_004 | 1/LA/31:38, 1/LA/45:53 | tSH-tHW-tHH-tHS | homologous IL_8CRE_005 NA | |
| IL_8ZGR_005 | 1/LA/82:89, 1/LA/97:103 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8P9A_235 IL_53348.1 | |
| IL_8ZGR_006 | 1/LA/123:124, 1/LA/144:149 | No text annotation | homologous IL_8CRE_007 NA | |
| IL_8ZGR_007 | 1/LA/125:127, 1/LA/141:143 | Isolated non-canonical cWW pair | homologous IL_8CRE_008 NA | |
| IL_8ZGR_008 | 1/LA/163:166, 1/LA/256:258 | No text annotation | ||
| IL_8ZGR_009 | 1/LA/168:171, 1/LA/247:254 | No text annotation | ||
| IL_8ZGR_010 | 1/LA/176:179, 1/LA/237:242 | No text annotation | ||
| IL_8ZGR_011 | 1/LA/189:191, 1/LA/204:205 | No text annotation | homologous IL_8CRE_013 NA | |
| IL_8ZGR_012 | 1/LA/336:339, 1/LC/25:27 | Isolated cWH basepair | geometric IL_406D_006 NA | |
| IL_8ZGR_013 | 1/LA/376:379, 1/LA/390:403 | No text annotation | geometric IL_5J7L_255 NA | |
| IL_8ZGR_014 | 1/LA/404:410, 1/LC/13:19 | No text annotation | homologous IL_8CRE_016 NA | |
| IL_8ZGR_015 | 1/LA/413:415, 1/LC/7:10 | Stack and bulge | geometric IL_2ET8_001 IL_61702.1 | |
| IL_8ZGR_016 | 1/LA/416:419, 1/LC/4:6 | No text annotation | ||
| IL_8ZGR_017 | 1/LA/429:431, 1/LA/627:629 | Isolated non-canonical cWW pair | homologous IL_8P9A_245 IL_71625.1 | |
| IL_8ZGR_018 | 1/LA/511:512, 1/LA/576:578 | Single bulged A | homologous IL_8CRE_020 NA | |
| IL_8ZGR_019 | 1/LA/516:524, 1/LA/566:572 | No text annotation | ||
| IL_8ZGR_020 | 1/LA/530:537, 1/LA/552:560 | No text annotation | homologous IL_8CRE_022 NA | |
| IL_8ZGR_021 | 1/LA/667:669, 1/LA/791:793 | Isolated non-canonical cWW pair | homologous IL_8CRE_023 NA | |
| IL_8ZGR_022 | 1/LA/679:683, 1/LA/695:699 | No text annotation | homologous IL_8P9A_250 IL_87030.1 | |
| IL_8ZGR_023 | 1/LA/724:727, 1/LA/740:744 | No text annotation | ||
| IL_8ZGR_024 | 1/LA/751:752, 1/LA/778:780 | Single bulged A | homologous IL_8P9A_252 IL_14190.1 | |
| IL_8ZGR_025 | 1/LA/754:755, 1/LA/774:776 | No text annotation | homologous IL_8CRE_027 NA | |
| IL_8ZGR_026 | 1/LA/757:762, 1/LA/767:772 | No text annotation | geometric IL_8P9A_410 IL_57885.1 | |
| IL_8ZGR_027 | 1/LA/802:804, 1/LA/937:939 | Isolated non-canonical cWW pair | homologous IL_8P9A_255 IL_01003.1 | |
| IL_8ZGR_028 | 1/LA/804:808, 1/LA/930:937 | No text annotation | homologous IL_8CRE_030 NA | |
| IL_8ZGR_029 | 1/LA/832:833, 1/LA/858:860 | No text annotation | homologous IL_8CRE_032 NA | |
| IL_8ZGR_030 | 1/LA/833:837, 1/LA/854:858 | Triple sheared | homologous IL_8CRE_033 NA | |
| IL_8ZGR_031 | 1/LA/868:871, 1/LA/887:889 | No text annotation | homologous IL_8CRE_034 NA | |
| IL_8ZGR_032 | 1/LA/872:874, 1/LA/885:886 | No text annotation | homologous IL_8CRE_035 NA | |
| IL_8ZGR_033 | 1/LA/906:908, 1/LA/918:922 | No text annotation | homologous IL_8CRE_036 NA | |
| IL_8ZGR_034 | 1/LA/953:955, 1/LA/964:966 | Isolated non-canonical cWW pair | homologous IL_8CRE_037 NA | |
| IL_8ZGR_035 | 1/LA/968:969, 1/LA/1110:1112 | Single stack bend | homologous IL_8CRE_038 NA | |
| IL_8ZGR_036 | 1/LA/971:973, 1/LA/1106:1108 | Isolated cWH basepair | geometric IL_8P9A_442 IL_10892.1 | |
| IL_8ZGR_037 | 1/LA/974:981, 1/LA/1100:1105 | No text annotation | ||
| IL_8ZGR_038 | 1/LA/982:984, 1/LA/1098:1099 | No text annotation | homologous IL_8CRE_040 NA | |
| IL_8ZGR_039 | 1/LA/990:996, 1/LA/1051:1057 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_8CRE_041 NA | |
| IL_8ZGR_040 | 1/LA/996:997, 1/LA/1049:1051 | Minor groove platform | homologous IL_8CRE_042 NA | |
| IL_8ZGR_041 | 1/LA/998:1003, 1/LA/1045:1048 | C-loop with bulged stacked A's | homologous IL_8CRE_043 NA | |
| IL_8ZGR_042 | 1/LA/1005:1008, 1/LA/1040:1043 | Tandem non-canonical cWW pairs | homologous IL_8P9A_269 IL_71194.1 | |
| IL_8ZGR_043 | 1/LA/1008:1012, 1/LA/1036:1040 | No text annotation | ||
| IL_8ZGR_044 | 1/LA/1012:1019, 1/LA/1031:1036 | No text annotation | ||
| IL_8ZGR_045 | 1/LA/1068:1070, 1/LA/1086:1088 | Isolated non-canonical cWW pair | homologous IL_8P9A_272 IL_01003.1 | |
| IL_8ZGR_046 | 1/LA/1073:1075, 1/LA/1082:1083 | No text annotation | homologous IL_8CRE_048 NA | |
| IL_8ZGR_047 | 1/LA/1118:1121, 1/LA/1135:1138 | Tandem non-canonical cWW pairs | geometric IL_1L9A_005 NA | |
| IL_8ZGR_049 | 1/LA/1166:1170, 1/LA/1327:1331 | UAA/GAN | homologous IL_8CRE_051 NA | |
| IL_8ZGR_050 | 1/LA/1172:1179, 1/LA/1324:1325 | SSU/LSU pseudoknot | homologous IL_8P9A_277 IL_07396.1 | |
| IL_8ZGR_051 | 1/LA/1179:1182, 1/LA/1322:1324 | Isolated cWH basepair | geometric IL_4WF9_121 IL_10892.1 | |
| IL_8ZGR_052 | 1/LA/1186:1193, 1/LA/1313:1318 | No text annotation | homologous IL_8CRE_054 NA | |
| IL_8ZGR_053 | 1/LA/1193:1204, 1/LA/1298:1313 | No text annotation | homologous IL_8CRE_055 NA | |
| IL_8ZGR_054 | 1/LA/1206:1208, 1/LA/1295:1296 | No text annotation | homologous IL_8CRE_056 NA | |
| IL_8ZGR_055 | 1/LA/1212:1225, 1/LA/1282:1291 | No text annotation | ||
| IL_8ZGR_058 | 1/LA/1375:1377, 1/LA/1427:1430 | No text annotation | homologous IL_8P9A_285 IL_42997.4 | |
| IL_8ZGR_059 | 1/LA/1384:1386, 1/LA/1419:1420 | Single bulged A | homologous IL_8CRE_062 NA | |
| IL_8ZGR_060 | 1/LA/1387:1394, 1/LA/1414:1418 | Kink-turn | homologous IL_8CRE_063 NA | |
| IL_8ZGR_061 | 1/LA/1397:1399, 1/LA/1410:1411 | Single bulged A | homologous IL_8P9A_288 IL_14190.1 | |
| IL_8ZGR_062 | 1/LA/1443:1449, 1/LA/2353:2358 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_8P9A_289 IL_02666.1 | |
| IL_8ZGR_063 | 1/LA/1499:1504, 1/LA/1512:1515 | No text annotation | ||
| IL_8ZGR_064 | 1/LA/1531:1535, 1/LA/1584:1589 | UAA/GAN | homologous IL_8CRE_067 NA | |
| IL_8ZGR_066 | 1/LA/1617:1620, 1/LA/1823:1825 | No text annotation | homologous IL_8CRE_069 NA | |
| IL_8ZGR_067 | 1/LA/1622:1623, 1/LA/1818:1821 | No text annotation | homologous IL_8CRE_070 NA | |
| IL_8ZGR_068 | 1/LA/1626:1630, 1/LA/1810:1815 | No text annotation | ||
| IL_8ZGR_069 | 1/LA/1644:1648, 1/LA/1805:1809 | Triple sheared | homologous IL_8CRE_072 NA | |
| IL_8ZGR_070 | 1/LA/1660:1662, 1/LA/1785:1787 | Isolated non-canonical cWW pair | homologous IL_8CRE_073 NA | |
| IL_8ZGR_071 | 1/LA/1668:1669, 1/LA/1777:1779 | Single bulged C | homologous IL_8P9A_297 IL_05642.1 | |
| IL_8ZGR_072 | 1/LA/1669:1670, 1/LA/1775:1777 | Single stack bend | homologous IL_8CRE_075 NA | |
| IL_8ZGR_073 | 1/LA/1693:1697, 1/LA/1746:1751 | No text annotation | homologous IL_8P9A_299 IL_25943.1 | |
| IL_8ZGR_074 | 1/LA/1701:1706, 1/LA/1736:1742 | No text annotation | homologous IL_8P9A_300 IL_00680.1 | |
| IL_8ZGR_075 | 1/LA/1710:1716, 1/LA/1726:1732 | No text annotation | homologous IL_8P9A_301 IL_93476.1 | |
| IL_8ZGR_076 | 1/LA/1882:1888, 1/LA/2345:2348 | No text annotation | ||
| IL_8ZGR_077 | 1/LA/1894:1896, 1/LA/2337:2339 | No text annotation | homologous IL_8CRE_080 NA | |
| IL_8ZGR_078 | 1/LA/1897:1900, 1/LA/2335:2336 | Major groove platform; stack outside cWW | geometric IL_8P9A_304 IL_74641.1 | |
| IL_8ZGR_079 | 1/LA/1897:1905, 1/LA/2332:2336 | No text annotation | geometric IL_8CRE_082 NA | |
| IL_8ZGR_080 | 1/LA/1900:1905, 1/LA/2332:2335 | No text annotation | homologous IL_8CRE_083 NA | |
| IL_8ZGR_081 | 1/LA/1917:1922, 1/LA/1927:1933 | No text annotation | homologous IL_8CRE_084 NA | |
| IL_8ZGR_082 | 1/LA/1939:1941, 1/LA/2105:2107 | Isolated non-canonical cWW pair | homologous IL_8CRE_085 NA | |
| IL_8ZGR_083 | 1/LA/1944:1947, 1/LA/2097:2102 | No text annotation | ||
| IL_8ZGR_085 | 1/LA/2123:2126, 1/LA/2325:2328 | Tandem non-canonical cWW pairs | geometric IL_1MFQ_004 IL_15225.1 | |
| IL_8ZGR_086 | 1/LA/2127:2128, 1/LA/2322:2324 | Single bulged A | homologous IL_8CRE_087 NA | |
| IL_8ZGR_087 | 1/LA/2155:2160, 1/LA/2172:2179 | No text annotation | homologous IL_8CRE_088 NA | |
| IL_8ZGR_088 | 1/LA/2195:2198, 1/LA/2244:2245 | Minor groove platform, major groove intercalation | homologous IL_8CRE_089 NA | |
| IL_8ZGR_089 | 1/LA/2199:2200, 1/LA/2240:2243 | No text annotation | homologous IL_8CRE_090 NA | |
| IL_8ZGR_090 | 1/LA/2203:2209, 1/LA/2234:2237 | No text annotation | ||
| IL_8ZGR_091 | 1/LA/2275:2276, 1/LA/2306:2309 | No text annotation | geometric IL_8CRE_094 NA | |
| IL_8ZGR_092 | 1/LA/2276:2287, 1/LA/2303:2306 | No text annotation | homologous IL_8CRE_095 NA | |
| IL_8ZGR_093 | 1/LA/2390:2393, 1/LA/2985:2987 | No text annotation | homologous IL_8P9A_319 IL_75527.1 | |
| IL_8ZGR_094 | 1/LA/2395:2397, 1/LA/2980:2983 | No text annotation | homologous IL_8P9A_320 IL_80025.1 | |
| IL_8ZGR_095 | 1/LA/2408:2410, 1/LA/2810:2811 | No text annotation | homologous IL_8CRE_098 NA | |
| IL_8ZGR_096 | 1/LA/2411:2412, 1/LA/2806:2809 | Minor groove platform | homologous IL_8CRE_099 NA | |
| IL_8ZGR_097 | 1/LA/2422:2424, 1/LA/2603:2606 | No text annotation | homologous IL_8CRE_100 NA | |
| IL_8ZGR_099 | 1/LA/2519:2525, 1/LA/2583:2586 | No text annotation | homologous IL_8CRE_106 NA | |
| IL_8ZGR_100 | 1/LA/2613:2614, 1/LA/2624:2626 | Single bulged A | homologous IL_8P9A_325 IL_14190.1 | |
| IL_8ZGR_101 | 1/LA/2665:2667, 1/LA/2685:2689 | No text annotation | homologous IL_8CRE_108 NA | |
| IL_8ZGR_102 | 1/LA/2717:2722, 1/LA/2732:2737 | No text annotation | ||
| IL_8ZGR_103 | 1/LA/2769:2772, 1/LA/2786:2787 | No text annotation | geometric IL_9FN3_002 NA | |
| IL_8ZGR_104 | 1/LA/2822:2823, 1/LA/2864:2866 | Major groove platform | homologous IL_8P9A_329 IL_48076.7 | |
| IL_8ZGR_105 | 1/LA/2823:2825, 1/LA/2862:2864 | Isolated non-canonical cWW pair | homologous IL_8P9A_330 IL_01003.1 | |
| IL_8ZGR_106 | 1/LA/2825:2827, 1/LA/2861:2862 | No text annotation | homologous IL_8CRE_112 NA | |
| IL_8ZGR_107 | 1/LA/2827:2829, 1/LA/2857:2861 | No text annotation | ||
| IL_8ZGR_108 | 1/LA/2834:2838, 1/LA/2848:2852 | Double sheared with non-canonical cWW | homologous IL_8CRE_114 NA | |
| IL_8ZGR_109 | 1/LA/2875:2876, 1/LA/2948:2950 | No text annotation | homologous IL_8CRE_115 NA | |
| IL_8ZGR_110 | 1/LA/2878:2880, 1/LA/2942:2946 | Isolated non-canonical cWW with bulges | homologous IL_8CRE_116 NA | |
| IL_8ZGR_111 | 1/LA/2880:2881, 1/LA/2939:2942 | No text annotation | homologous IL_8P9A_336 IL_44609.1 | |
| IL_8ZGR_112 | 1/LA/2888:2890, 1/LA/2911:2913 | Isolated non-canonical cWW pair | geometric IL_8P9A_337 IL_01003.1 | |
| IL_8ZGR_113 | 1/LA/2888:2891, 1/LA/2908:2913 | No text annotation | geometric IL_8CRE_119 NA | |
| IL_8ZGR_114 | 1/LA/2890:2891, 1/LA/2908:2911 | No text annotation | homologous IL_8CRE_120 NA | |
| IL_8ZGR_115 | 1/LA/2917:2919, 1/LA/2925:2927 | Isolated non-canonical cWW pair | homologous IL_8CRE_121 NA | |
| IL_8ZGR_116 | 1/LA/2959:2960, 1/LA/2969:2971 | Single bulged A | geometric IL_2VPL_002 IL_14190.1 | |
| IL_8ZGR_117 | 1/LA/3003:3006, 1/LA/3138:3143 | Double sheared | homologous IL_8P9A_342 IL_58355.1 | |
| IL_8ZGR_118 | 1/LA/3011:3013, 1/LA/3039:3041 | Isolated non-canonical cWW pair | homologous IL_8P9A_343 IL_71625.1 | |
| IL_8ZGR_119 | 1/LA/3017:3024, 1/LA/3029:3035 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8CRE_125 NA | |
| IL_8ZGR_120 | 1/LA/3046:3050, 1/LA/3090:3093 | No text annotation | homologous IL_8P9A_345 IL_06671.1 | |
| IL_8ZGR_121 | 1/LA/3053:3058, 1/LA/3083:3087 | No text annotation | homologous IL_8P9A_346 IL_98200.1 | |
| IL_8ZGR_122 | 1/LA/3062:3063, 1/LA/3076:3079 | No text annotation | homologous IL_8CRE_128 NA | |
| IL_8ZGR_123 | 1/LA/3102:3106, 1/LA/3126:3130 | UAA/GAN | homologous IL_8CRE_129 NA | |
| IL_8ZGR_124 | 1/LA/3157:3158, 1/LA/3290:3292 | No text annotation | ||
| IL_8ZGR_126 | 1/LA/3176:3178, 1/LA/3209:3210 | Single bulged A | homologous IL_8P9A_351 IL_14190.1 | |
| IL_8ZGR_127 | 1/LA/3178:3187, 1/LA/3203:3209 | No text annotation | homologous IL_8CRE_132 NA | |
| IL_8ZGR_128 | 1/LA/3192:3193, 1/LA/3196:3198 | Single bulged U | geometric IL_5J7L_298 NA | |
| IL_8ZGR_129 | 1/LA/3224:3228, 1/LA/3257:3259 | No text annotation | ||
| IL_8ZGR_130 | 1/LA/3232:3234, 1/LA/3251:3253 | Isolated non-canonical cWW pair | homologous IL_8P9A_354 IL_01003.1 | |
| IL_8ZGR_131 | 1/LA/3234:3237, 1/LA/3248:3251 | Tandem non-canonical cWW pairs | geometric IL_6JDV_002 IL_15225.1 | |
| IL_8ZGR_132 | 1/LA/3299:3302, 1/LA/3310:3313 | Tandem non-canonical cWW pairs | homologous IL_8CRE_135 NA | |
| IL_8ZGR_133 | 1/LA/3317:3319, 1/LA/3386:3387 | No text annotation | homologous IL_8CRE_136 NA | |
| IL_8ZGR_134 | 1/LA/3323:3324, 1/LA/3380:3382 | No text annotation | homologous IL_8CRE_137 NA | |
| IL_8ZGR_135 | 1/LA/3327:3329, 1/LA/3372:3377 | No text annotation | homologous IL_8CRE_138 NA | |
| IL_8ZGR_136 | 1/LA/3331:3336, 1/LA/3366:3370 | No text annotation | homologous IL_8CRE_139 NA | |
| IL_8ZGR_137 | 1/LA/3339:3341, 1/LA/3362:3363 | No text annotation | homologous IL_8CRE_140 NA | |
| IL_8ZGR_138 | 1/LA/3341:3344, 1/LA/3359:3362 | Double sheared | homologous IL_8CRE_141 NA | |
| IL_8ZGR_140 | 1/LB/15:16, 1/LB/63:65 | Single bulged A | homologous IL_8P9A_364 IL_14190.1 | |
| IL_8ZGR_141 | 1/LB/21:28, 1/LB/52:58 | No text annotation | ||
| IL_8ZGR_142 | 1/LB/28:29, 1/LB/49:52 | No text annotation | homologous IL_8OI5_136 IL_87975.1 | |
| IL_8ZGR_143 | 1/LB/29:30, 1/LB/47:49 | Single stack bend | homologous IL_8P9A_367 IL_15011.1 | |
| IL_8ZGR_144 | 1/LB/32:36, 1/LB/41:45 | No text annotation | homologous IL_8OI5_138 IL_58103.12 | |
| IL_8ZGR_145 | 1/LB/72:80, 1/LB/100:106 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7A0S_006 IL_62167.1 | |
| IL_8ZGR_146 | 1/LB/84:87, 1/LB/94:96 | Isolated non-canonical cWW pair | homologous IL_8OI5_140 IL_01003.1 | |
| IL_8ZGR_147 | 1/LC/64:66, 1/LC/93:96 | Isolated non-canonical cWW with bulges | homologous IL_8P9A_371 IL_68118.1 | |
| IL_8ZGR_148 | 1/LC/68:69, 1/LC/89:91 | Single bulged U | homologous IL_8P9A_372 IL_97561.1 | |
| IL_8ZGR_149 | 1/S2/24:26, 1/S2/600:601 | Single bulged C | geometric IL_7PMM_001 IL_05642.1 | |
| IL_8ZGR_150 | 1/S2/42:48, 1/S2/431:433 | No text annotation | geometric IL_8P9A_376 IL_88082.2 | |
| IL_8ZGR_151 | 1/S2/50:52, 1/S2/428:429 | Minor groove platform | geometric IL_8CRE_394 IL_34520.1 | |
| IL_8ZGR_152 | 1/S2/58:63, 1/S2/87:89 | No text annotation | geometric IL_8P9A_378 IL_61299.5 | |
| IL_8ZGR_153 | 1/S2/64:69, 1/S2/82:86 | No text annotation | ||
| IL_8ZGR_154 | 1/S2/109:112, 1/S2/302:305 | Tandem non-canonical cWW pairs | geometric IL_8P9A_380 IL_71194.1 | |
| IL_8ZGR_155 | 1/S2/113:116, 1/S2/300:301 | No text annotation | geometric IL_8CRE_398 IL_71421.1 | |
| IL_8ZGR_156 | 1/S2/116:124, 1/S2/293:300 | No text annotation | ||
| IL_8ZGR_158 | 1/S2/150:152, 1/S2/162:164 | Isolated cWH basepair | geometric IL_8P9A_394 IL_10892.1 | |
| IL_8ZGR_160 | 1/S2/204:210, 1/S2/255:263 | No text annotation | ||
| IL_8ZGR_161 | 1/S2/270:274, 1/S2/282:285 | No text annotation | ||
| IL_8ZGR_163 | 1/S2/311:316, 1/S2/348:355 | Kink-turn with non-sequential stacking | geometric IL_8CRE_408 IL_46174.4 | |
| IL_8ZGR_164 | 1/S2/318:323, 1/S2/345:346 | Multiple bulged bases | geometric IL_6JXM_001 NA | |
| IL_8ZGR_165 | 1/S2/363:365, 1/S2/376:381 | No text annotation | geometric IL_8CRE_410 IL_93336.1 | |
| IL_8ZGR_166 | 1/S2/389:391, 1/S2/406:408 | Isolated cWH basepair | geometric IL_8CRE_411 IL_10892.1 | |
| IL_8ZGR_167 | 1/S2/411:413, 1/S2/420:422 | No text annotation | geometric IL_8CRE_412 IL_42997.4 | |
| IL_8ZGR_168 | 1/S2/439:441, 1/S2/463:464 | Single bulged U | geometric IL_8P9A_396 IL_97561.1 | |
| IL_8ZGR_169 | 1/S2/443:447, 1/S2/460:461 | C-loop | geometric IL_8CRE_414 IL_26900.1 | |
| IL_8ZGR_170 | 1/S2/447:448, 1/S2/458:460 | No text annotation | geometric IL_8CRE_415 IL_28408.1 | |
| IL_8ZGR_175 | 1/S2/550:557, 1/S2/587:588 | SSU/LSU pseudoknot | geometric IL_8P9A_277 IL_07396.1 | |
| IL_8ZGR_176 | 1/S2/557:559, 1/S2/586:587 | No text annotation | geometric IL_8CRE_422 IL_97561.1 | |
| IL_8ZGR_177 | 1/S2/562:568, 1/S2/575:583 | No text annotation | geometric IL_8P9A_404 IL_52042.1 | |
| IL_8ZGR_178 | 1/S2/616:622, 1/S2/1104:1105 | No text annotation | geometric IL_8CRE_424 IL_20847.1 | |
| IL_8ZGR_179 | 1/S2/624:626, 1/S2/973:975 | Isolated non-canonical cWW pair | geometric IL_8CRE_425 IL_01003.1 | |
| IL_8ZGR_180 | 1/S2/627:631, 1/S2/968:972 | tSH-tHW-tHS | geometric IL_8CRE_426 IL_05821.1 | |
| IL_8ZGR_182 | 1/S2/746:747, 1/S2/802:805 | No text annotation | ||
| IL_8ZGR_183 | 1/S2/748:750, 1/S2/799:801 | No text annotation | geometric IL_6RTI_005 NA | |
| IL_8ZGR_184 | 1/S2/751:759, 1/S2/791:798 | No text annotation | ||
| IL_8ZGR_185 | 1/S2/817:822, 1/S2/850:854 | No text annotation | ||
| IL_8ZGR_186 | 1/S2/865:869, 1/S2/958:965 | No text annotation | ||
| IL_8ZGR_187 | 1/S2/871:874, 1/S2/953:956 | Tandem non-canonical cWW pairs | geometric IL_8CRE_433 IL_15225.1 | |
| IL_8ZGR_188 | 1/S2/874:878, 1/S2/950:953 | Tandem non-canonical cWW pairs | geometric IL_8CRE_434 IL_15225.1 | |
| IL_8ZGR_189 | 1/S2/885:889, 1/S2/924:927 | No text annotation | ||
| IL_8ZGR_192 | 1/S2/985:990, 1/S2/1014:1016 | No text annotation | ||
| IL_8ZGR_193 | 1/S2/990:994, 1/S2/1010:1014 | tSH-tHW-tHS | geometric IL_8CRE_438 IL_05821.1 | |
| IL_8ZGR_194 | 1/S2/1034:1036, 1/S2/1095:1101 | No text annotation | geometric IL_8CRE_439 IL_82706.2 | |
| IL_8ZGR_195 | 1/S2/1041:1045, 1/S2/1073:1077 | No text annotation | ||
| IL_8ZGR_197 | 1/S2/1111:1118, 1/S2/1129:1134 | No text annotation | ||
| IL_8ZGR_198 | 1/S2/1146:1151, 1/S2/1627:1632 | No text annotation | ||
| IL_8ZGR_199 | 1/S2/1157:1160, 1/S2/1617:1621 | C-loop | geometric IL_9DFE_103 IL_63596.12 | |
| IL_8ZGR_200 | 1/S2/1173:1175, 1/S2/1464:1466 | Isolated non-canonical cWW pair | geometric IL_4V9F_017 IL_01003.1 | |
| IL_8ZGR_201 | 1/S2/1178:1179, 1/S2/1459:1461 | Minor groove platform | geometric IL_5J7L_042 NA | |
| IL_8ZGR_203 | 1/S2/1224:1233, 1/S2/1252:1259 | No text annotation | ||
| IL_8ZGR_206 | 1/S2/1271:1276, 1/S2/1436:1439 | No text annotation | ||
| IL_8ZGR_207 | 1/S2/1271:1278, 1/S2/1430:1439 | No text annotation | ||
| IL_8ZGR_209 | 1/S2/1280:1281, 1/S2/1426:1428 | Single bulged A | geometric IL_8CRE_455 IL_14190.1 | |
| IL_8ZGR_210 | 1/S2/1290:1292, 1/S2/1323:1325 | Isolated cWH basepair | geometric IL_8P9A_442 IL_10892.1 | |
| IL_8ZGR_211 | 1/S2/1306:1308, 1/S2/1317:1318 | Minor groove platform | geometric IL_8CRE_420 IL_34520.1 | |
| IL_8ZGR_219 | 1/S2/1540:1545, 1/S2/1566:1571 | No text annotation | ||
| IL_8ZGR_220 | 1/S2/1636:1638, 1/S2/1764:1767 | No text annotation | geometric IL_8CRE_466 IL_18228.1 | |
| IL_8ZGR_221 | 1/S2/1638:1641, 1/S2/1760:1764 | No text annotation | geometric IL_8CRE_467 IL_25873.1 | |
| IL_8ZGR_222 | 1/S2/1642:1644, 1/S2/1757:1759 | Isolated non-canonical cWW pair | geometric IL_5J7L_363 NA | |
| IL_8ZGR_223 | 1/S2/1644:1647, 1/S2/1753:1757 | No text annotation | ||
| IL_8ZGR_224 | 1/S2/1650:1652, 1/S2/1748:1750 | No text annotation | geometric IL_2GUN_002 NA | |
| IL_8ZGR_225 | 1/S2/1653:1656, 1/S2/1744:1747 | Double sheared | geometric IL_8CRE_471 IL_58355.1 | |
| IL_8ZGR_226 | 1/S2/1656:1658, 1/S2/1743:1744 | No text annotation | ||
| IL_8ZGR_227 | 1/S2/1664:1667, 1/S2/1734:1737 | No text annotation | ||
| IL_8ZGR_228 | 1/S2/1669:1672, 1/S2/1729:1732 | Double sheared | geometric IL_8CRE_474 IL_58355.1 | |
| IL_8ZGR_229 | 1/S2/1672:1674, 1/S2/1727:1729 | Isolated non-canonical cWW pair | geometric IL_8CRE_085 NA | |
| IL_8ZGR_230 | 1/S2/1675:1678, 1/S2/1723:1726 | Tandem non-canonical cWW pairs | geometric IL_8P9A_462 IL_71194.1 | |
| IL_8ZGR_231 | 1/S2/1678:1683, 1/S2/1718:1723 | No text annotation | ||
| IL_8ZGR_232 | 1/S2/1687:1690, 1/S2/1711:1714 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8ZGR_048 | No text annotation | ||
| IL_8ZGR_056 | No text annotation | ||
| IL_8ZGR_057 | No text annotation | ||
| IL_8ZGR_065 | No text annotation | ||
| IL_8ZGR_084 | No text annotation | ||
| IL_8ZGR_098 | No text annotation | ||
| IL_8ZGR_125 | No text annotation | ||
| IL_8ZGR_139 | No text annotation | ||
| IL_8ZGR_157 | No text annotation | ||
| IL_8ZGR_159 | No text annotation | ||
| IL_8ZGR_162 | No text annotation | ||
| IL_8ZGR_171 | No text annotation | ||
| IL_8ZGR_172 | No text annotation | ||
| IL_8ZGR_173 | No text annotation | ||
| IL_8ZGR_174 | No text annotation | ||
| IL_8ZGR_181 | No text annotation | ||
| IL_8ZGR_190 | No text annotation | ||
| IL_8ZGR_191 | No text annotation | ||
| IL_8ZGR_196 | No text annotation | ||
| IL_8ZGR_202 | Isolated non-canonical cWW pair | ||
| IL_8ZGR_204 | No text annotation | ||
| IL_8ZGR_205 | Single bulged U | ||
| IL_8ZGR_208 | No text annotation | ||
| IL_8ZGR_212 | No text annotation | ||
| IL_8ZGR_213 | No text annotation | ||
| IL_8ZGR_214 | No text annotation | ||
| IL_8ZGR_215 | No text annotation | ||
| IL_8ZGR_216 | No text annotation | ||
| IL_8ZGR_217 | No text annotation | ||
| IL_8ZGR_218 | No text annotation | ||
| IL_8ZGR_233 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8ZGR_001 | 1/LA/113:123, 1/LA/149:158, 1/LA/263:267 | No text annotation | homologous J3_8CRE_001 NA | |
| J3_8ZGR_002 | 1/LA/113:124, 1/LA/144:158, 1/LA/263:267 | No text annotation | ||
| J3_8ZGR_003 | 1/LA/185:189, 1/LA/205:214, 1/LA/226:231 | No text annotation | homologous J3_8P9A_044 J3_97456.1 | |
| J3_8ZGR_004 | 1/LA/340:356, 1/LA/363:368, 1/LC/21:24 | No text annotation | homologous J3_8P9A_045 J3_07616.1 | |
| J3_8ZGR_005 | 1/LA/369:376, 1/LA/403:404, 1/LC/19:20 | No text annotation | geometric J3_8CRE_005 NA | |
| J3_8ZGR_006 | 1/LA/369:379, 1/LA/390:404, 1/LC/19:20 | No text annotation | homologous J3_8P9A_047 J3_17917.1 | |
| J3_8ZGR_007 | 1/LA/501:502, 1/LA/587:596, 1/LA/605:610 | No text annotation | homologous J3_8P9A_048 J3_86133.1 | |
| J3_8ZGR_008 | 1/LA/813:819, 1/LA/904:906, 1/LA/922:925 | No text annotation | homologous J3_8CRE_009 NA | |
| J3_8ZGR_009 | 1/LA/827:830, 1/LA/862:866, 1/LA/891:896 | No text annotation | homologous J3_8P9A_050 J3_21998.1 | |
| J3_8ZGR_010 | 1/LA/985:986, 1/LA/1061:1065, 1/LA/1091:1097 | No text annotation | homologous J3_8CRE_011 NA | |
| J3_8ZGR_012 | 1/LA/1478:1484, 1/LA/1856:1858, 1/LA/1870:1873 | No text annotation | homologous J3_8CRE_013 NA | |
| J3_8ZGR_013 | 1/LA/1487:1490, 1/LA/1836:1842, 1/LA/1851:1853 | No text annotation | homologous J3_8P9A_054 J3_76012.1 | |
| J3_8ZGR_014 | 1/LA/1525:1530, 1/LA/1590:1594, 1/LA/1611:1612 | No text annotation | homologous J3_8CRE_015 NA | |
| J3_8ZGR_015 | 1/LA/1536:1541, 1/LA/1550:1560, 1/LA/1578:1583 | No text annotation | ||
| J3_8ZGR_016 | 1/LA/1630:1631, 1/LA/1640:1644, 1/LA/1809:1810 | No text annotation | homologous J3_8P9A_087 J3_05348.1 | |
| J3_8ZGR_017 | 1/LA/1653:1657, 1/LA/1790:1791, 1/LA/1795:1800 | No text annotation | homologous J3_8P9A_058 J3_08594.1 | |
| J3_8ZGR_018 | 1/LA/2431:2434, 1/LA/2511:2516, 1/LA/2589:2596 | No text annotation | homologous J3_8CRE_019 NA | |
| J3_8ZGR_019 | 1/LA/2528:2531, 1/LA/2546:2562, 1/LA/2577:2580 | No text annotation | homologous J3_8CRE_020 NA | |
| J3_8ZGR_020 | 1/LA/2650:2652, 1/LA/2753:2764, 1/LA/2792:2797 | No text annotation | homologous J3_8CRE_021 NA | |
| J3_8ZGR_021 | 1/LA/2663:2665, 1/LA/2689:2691, 1/LA/2700:2705 | No text annotation | homologous J3_8P9A_062 J3_05327.1 | |
| J3_8ZGR_022 | 1/LA/2885:2888, 1/LA/2913:2915, 1/LA/2929:2935 | No text annotation | homologous J3_8CRE_023 NA | |
| J3_8ZGR_023 | 1/LA/3166:3175, 1/LA/3211:3219, 1/LA/3264:3282 | No text annotation | ||
| J3_8ZGR_024 | 1/LA/3297:3299, 1/LA/3313:3317, 1/LA/3387:3389 | No text annotation | homologous J3_8P9A_065 J3_81015.1 | |
| J3_8ZGR_025 | 1/LB/9:14, 1/LB/66:67, 1/LB/111:112 | No text annotation | homologous J3_8P9A_066 J3_26985.1 | |
| J3_8ZGR_026 | 1/LC/43:45, 1/LC/58:64, 1/LC/96:101 | No text annotation | ||
| J3_8ZGR_027 | 1/S2/41:42, 1/S2/433:439, 1/S2/464:466 | No text annotation | geometric J3_8CRE_071 J3_58657.1 | |
| J3_8ZGR_028 | 1/S2/41:48, 1/S2/431:439, 1/S2/464:466 | No text annotation | geometric J3_8CRE_072 J3_63856.1 | |
| J3_8ZGR_029 | 1/S2/213:228, 1/S2/237:243, 1/S2/250:252 | No text annotation | ||
| J3_8ZGR_030 | 1/S2/633:635, 1/S2/861:865, 1/S2/965:966 | No text annotation | geometric J3_8P9A_071 J3_01633.1 | |
| J3_8ZGR_031 | 1/S2/633:635, 1/S2/861:869, 1/S2/958:966 | No text annotation | ||
| J3_8ZGR_032 | 1/S2/759:763, 1/S2/773:775, 1/S2/785:791 | No text annotation | ||
| J3_8ZGR_033 | 1/S2/881:884, 1/S2/928:936, 1/S2/943:947 | No text annotation | ||
| J3_8ZGR_034 | 1/S2/1037:1040, 1/S2/1078:1083, 1/S2/1090:1094 | No text annotation | ||
| J3_8ZGR_036 | 1/S2/1166:1171, 1/S2/1468:1470, 1/S2/1574:1579 | No text annotation | ||
| J3_8ZGR_037 | 1/S2/1180:1187, 1/S2/1198:1209, 1/S2/1454:1458 | No text annotation | ||
| J3_8ZGR_039 | 1/S2/1282:1288, 1/S2/1327:1332, 1/S2/1419:1425 | No text annotation | ||
| J3_8ZGR_040 | 1/S2/1293:1294, 1/S2/1303:1306, 1/S2/1318:1322 | No text annotation | ||
| J3_8ZGR_041 | 1/S2/1333:1338, 1/S2/1386:1389, 1/S2/1412:1418 | No text annotation | ||
| J3_8ZGR_042 | 1/S2/1333:1338, 1/S2/1386:1392, 1/S2/1406:1418 | No text annotation | ||
| J3_8ZGR_043 | 1/S2/1470:1474, 1/S2/1533:1540, 1/S2/1571:1574 | No text annotation | ||
| J4_8ZGR_001 | 1/LA/112:113, 1/LA/267:272, 1/LA/293:299, 1/LA/316:319 | No text annotation | homologous J4_8CRE_001 NA | |
| J4_8ZGR_002 | 1/LA/185:189, 1/LA/205:208, 1/LA/212:214, 1/LA/226:231 | No text annotation | homologous J4_8P9A_013 J4_43318.1 | |
| J4_8ZGR_003 | 1/LA/1450:1456, 1/LA/1474:1475, 1/LA/1876:1879, 1/LA/2351:2352 | No text annotation | homologous J4_8CRE_003 NA | |
| J4_8ZGR_004 | 1/LA/1491:1495, 1/LA/1519:1524, 1/LA/1613:1614, 1/LA/1828:1835 | No text annotation | homologous J4_8P9A_015 J4_47264.1 | |
| J4_8ZGR_005 | 1/LA/1673:1674, 1/LA/1692:1693, 1/LA/1751:1752, 1/LA/1771:1772 | No text annotation | homologous J4_8CRE_005 NA | |
| J4_8ZGR_006 | 1/LA/2129:2133, 1/LA/2145:2149, 1/LA/2185:2189, 1/LA/2316:2321 | No text annotation | homologous J4_8P9A_017 J4_78485.1 | |
| J4_8ZGR_007 | 1/LA/2191:2193, 1/LA/2247:2248, 1/LA/2266:2275, 1/LA/2309:2314 | No text annotation | homologous J4_8CRE_007 NA | |
| J4_8ZGR_008 | 1/LA/2653:2657, 1/LA/2711:2715, 1/LA/2739:2741, 1/LA/2750:2752 | No text annotation | homologous J4_8CRE_008 NA | |
| J4_8ZGR_009 | 1/LA/3009:3011, 1/LA/3041:3042, 1/LA/3097:3099, 1/LA/3133:3135 | No text annotation | homologous J4_8P9A_020 J4_37757.1 | |
| J4_8ZGR_010 | 1/S2/99:107, 1/S2/307:309, 1/S2/357:361, 1/S2/383:384 | No text annotation | ||
| J4_8ZGR_011 | 1/S2/622:624, 1/S2/975:980, 1/S2/1021:1032, 1/S2/1103:1104 | No text annotation | ||
| J5_8ZGR_001 | 1/LA/20:22, 1/LC/35:42, 1/LC/102:107, 1/LC/115:116, 1/LC/137:139 | No text annotation | homologous J5_8CRE_001 NA | |
| J5_8ZGR_002 | 1/LA/657:662, 1/LA/798:801, 1/LA/940:943, 1/LA/1374:1375, 1/LA/1430:1436 | No text annotation | homologous J5_8CRE_002 NA | |
| J5_8ZGR_003 | 1/LA/674:677, 1/LA/701:705, 1/LA/712:720, 1/LA/748:750, 1/LA/781:786 | No text annotation | homologous J5_8P9A_012 J5_56629.1 | |
| J5_8ZGR_004 | 1/LA/1905:1913, 1/LA/1937:1938, 1/LA/2108:2109, 1/LA/2113:2121, 1/LA/2330:2332 | No text annotation | homologous J5_8CRE_004 NA | |
| J5_8ZGR_005 | 1/LA/2398:2405, 1/LA/2814:2822, 1/LA/2866:2875, 1/LA/2950:2956, 1/LA/2974:2979 | No text annotation | ||
| J5_8ZGR_006 | 1/LA/2415:2418, 1/LA/2610:2613, 1/LA/2626:2627, 1/LA/2649:2650, 1/LA/2797:2803 | No text annotation | homologous J5_8P9A_015 J5_96125.1 | |
| J5_8ZGR_007 | 1/S2/31:41, 1/S2/466:479, 1/S2/509:514, 1/S2/543:547, 1/S2/591:595 | No text annotation | ||
| J5_8ZGR_008 | 1/S2/54:57, 1/S2/90:97, 1/S2/386:388, 1/S2/409:411, 1/S2/422:426 | No text annotation | ||
| J5_8ZGR_009 | 1/S2/124:143, 1/S2/172:182, 1/S2/203:204, 1/S2/263:267, 1/S2/288:293 | No text annotation | ||
| J5_8ZGR_010 | 1/S2/636:642, 1/S2/692:700, 1/S2/738:744, 1/S2/807:817, 1/S2/854:860 | No text annotation | ||
| J6_8ZGR_001 | 1/LA/22:27, 1/LA/58:68, 1/LA/75:79, 1/LA/106:110, 1/LA/321:331, 1/LC/32:35 | No text annotation | ||
| J6_8ZGR_002 | 1/LA/2415:2418, 1/LA/2610:2613, 1/LA/2626:2627, 1/LA/2649:2652, 1/LA/2753:2764, 1/LA/2792:2803 | No text annotation | ||
| J7_8ZGR_001 | 1/LA/948:953, 1/LA/966:967, 1/LA/1113:1116, 1/LA/1140:1145, 1/LA/1156:1160, 1/LA/1337:1338, 1/LA/1364:1369 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8ZGR_011 | No text annotation | ||
| J3_8ZGR_035 | No text annotation | ||
| J3_8ZGR_038 | No text annotation | ||
| J4_8ZGR_012 | No text annotation |
Coloring options: