HL_8ZGR_015
3D structure
- PDB id
- 8ZGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGUAAAA
- Length
- 7 nucleotides
- Bulged bases
- 8ZGR|1|LA|U|688, 8ZGR|1|LA|A|689, 8ZGR|1|LA|A|690
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ZGR_015 not in the Motif Atlas
- Geometric match to HL_361D_002
- Geometric discrepancy: 0.3246
- The information below is about HL_361D_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.3
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
8ZGR|1|LA|U|686
8ZGR|1|LA|G|687
8ZGR|1|LA|U|688
8ZGR|1|LA|A|689
8ZGR|1|LA|A|690
8ZGR|1|LA|A|691
8ZGR|1|LA|A|692
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LF
- Large ribosomal subunit protein uL4A
- Chain LN
- Large ribosomal subunit protein eL13A
- Chain LP
- Large ribosomal subunit protein eL15A
- Chain La
- Large ribosomal subunit protein uL24A
Coloring options: