HL_8ZGR_017

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

8ZGR|1|LA|C|733, 8ZGR|1|LA|A|734, 8ZGR|1|LA|A|735

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGR_017 not in the Motif Atlas

Geometric match to HL_4LFB_005

Geometric discrepancy: 0.3771

The information below is about HL_4LFB_005

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8ZGR|1|LA|C|731
8ZGR|1|LA|G|732
8ZGR|1|LA|C|733
8ZGR|1|LA|A|734
8ZGR|1|LA|A|735
8ZGR|1|LA|G|736

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains