HL_8ZGR_023

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAAAUG

Length

7 nucleotides

Bulged bases

8ZGR|1|LA|G|1023, 8ZGR|1|LA|A|1024, 8ZGR|1|LA|A|1025, 8ZGR|1|LA|A|1026, 8ZGR|1|LA|U|1027

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZGR|1|LA|C|1022
8ZGR|1|LA|G|1023
8ZGR|1|LA|A|1024
8ZGR|1|LA|A|1025
8ZGR|1|LA|A|1026
8ZGR|1|LA|U|1027
8ZGR|1|LA|G|1028

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LM

Large ribosomal subunit protein uL5B

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain SE

Small ribosomal subunit protein uS19

Chain SN

Small ribosomal subunit protein eS31