HL_8ZGR_039

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

ACCUUU

Length

6 nucleotides

Bulged bases

8ZGR|1|LA|C|1761, 8ZGR|1|LA|U|1762, 8ZGR|1|LA|U|1763

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGR_039 not in the Motif Atlas

Homologous match to HL_8CRE_038

Geometric discrepancy: 0.4685

The information below is about HL_8CRE_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

8ZGR|1|LA|A|1759
8ZGR|1|LA|C|1760
8ZGR|1|LA|C|1761
8ZGR|1|LA|U|1762
8ZGR|1|LA|U|1763
8ZGR|1|LA|U|1764

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LT

Large ribosomal subunit protein eL19A

Chain LZ

Large ribosomal subunit protein uL23