HL_8ZGR_086
3D structure
- PDB id
- 8ZGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 8ZGR|1|S2|C|402, 8ZGR|1|S2|G|403
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ZGR_086 not in the Motif Atlas
- Geometric match to HL_8CRE_200
- Geometric discrepancy: 0.1256
- The information below is about HL_8CRE_200
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.1
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8ZGR|1|S2|C|393
8ZGR|1|S2|C|394
8ZGR|1|S2|U|395
8ZGR|1|S2|G|396
8ZGR|1|S2|A|397
8ZGR|1|S2|G|398
8ZGR|1|S2|A|399
8ZGR|1|S2|A|400
8ZGR|1|S2|A|401
8ZGR|1|S2|C|402
8ZGR|1|S2|G|403
8ZGR|1|S2|G|404
Current chains
- Chain S2
- chain 2 18S rRNA (1800-MER)
Nearby chains
- Chain SS
- Small ribosomal subunit protein eS4A
- Chain ST
- Small ribosomal subunit protein eS6A
- Chain SV
- Small ribosomal subunit protein eS8A
- Chain Sd
- Small ribosomal subunit protein eS24A
Coloring options: