HL_8ZGR_096

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGR_096 not in the Motif Atlas

Geometric match to HL_8CRE_211

Geometric discrepancy: 0.0756

The information below is about HL_8CRE_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8ZGR|1|S2|C|937
8ZGR|1|S2|G|938
8ZGR|1|S2|A|939
8ZGR|1|S2|A|940
8ZGR|1|S2|A|941
8ZGR|1|S2|G|942

Current chains

Chain S2

chain 2 18S rRNA (1800-MER)

Nearby chains

Chain SY

Small ribosomal subunit protein uS15

Chain Se

Small ribosomal subunit protein eS26B