3D structure

PDB id
8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S ribosome with P/E tRNA and mRNA of WNV
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CGUAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8ZGY_013 not in the Motif Atlas
Homologous match to HL_8P9A_125
Geometric discrepancy: 0.5664
The information below is about HL_8P9A_125
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

8ZGY|1|LA|C|598
8ZGY|1|LA|G|599
8ZGY|1|LA|U|600
8ZGY|1|LA|A|601
8ZGY|1|LA|A|602
8ZGY|1|LA|G|603

Current chains

Chain LA
25S rRNA (3393-MER)

Nearby chains

Chain LF
Large ribosomal subunit protein uL4A
Chain LI
Large ribosomal subunit protein uL30A

Coloring options:


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