8ZGY Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8ZGY_001 | 1/LA/38:45 | No text annotation | homologous HL_8P9A_113 HL_48677.1 | |
| HL_8ZGY_002 | 1/LA/69:74 | No text annotation | homologous HL_8CRE_002 NA | |
| HL_8ZGY_003 | 1/LA/90:96 | No text annotation | homologous HL_8CRE_003 NA | |
| HL_8ZGY_004 | 1/LA/132:136 | No text annotation | homologous HL_8CRE_004 NA | |
| HL_8ZGY_005 | 1/LA/194:201 | T-loop with 1 bulged base | homologous HL_8P9A_117 HL_13999.2 | |
| HL_8ZGY_006 | 1/LA/208:212 | No text annotation | geometric HL_5J7L_143 NA | |
| HL_8ZGY_007 | 1/LA/216:224 | T-loop with unstacked turn | homologous HL_8CRE_007 NA | |
| HL_8ZGY_008 | 1/LA/278:287 | T-loop related | homologous HL_8CRE_008 NA | |
| HL_8ZGY_009 | 1/LA/303:312 | No text annotation | homologous HL_8CRE_009 NA | |
| HL_8ZGY_010 | 1/LA/357:362 | GNRA | homologous HL_8CRE_010 NA | |
| HL_8ZGY_011 | 1/LA/382:387 | GNRA | homologous HL_8CRE_011 NA | |
| HL_8ZGY_013 | 1/LA/598:603 | GNRA | homologous HL_8P9A_125 HL_34789.2 | |
| HL_8ZGY_014 | 1/LA/639:648 | T-loop with 2 stacked bulged bases | homologous HL_8CRE_013 NA | |
| HL_8ZGY_015 | 1/LA/685:693 | No text annotation | homologous HL_8CRE_014 NA | |
| HL_8ZGY_016 | 1/LA/706:711 | GNRA | homologous HL_8P9A_128 HL_34789.2 | |
| HL_8ZGY_017 | 1/LA/731:736 | No text annotation | ||
| HL_8ZGY_018 | 1/LA/762:767 | No text annotation | homologous HL_8CRE_017 NA | |
| HL_8ZGY_019 | 1/LA/843:848 | GNRA | homologous HL_8P9A_131 HL_34789.2 | |
| HL_8ZGY_020 | 1/LA/875:884 | No text annotation | homologous HL_8CRE_019 NA | |
| HL_8ZGY_021 | 1/LA/909:917 | No text annotation | homologous HL_8P9A_133 HL_92598.1 | |
| HL_8ZGY_022 | 1/LA/957:962 | No text annotation | homologous HL_8P9A_134 HL_27530.1 | |
| HL_8ZGY_024 | 1/LA/1075:1082 | T-loop related | homologous HL_8P9A_136 HL_63894.2 | |
| HL_8ZGY_025 | 1/LA/1125:1131 | GNRA | homologous HL_8CRE_024 NA | |
| HL_8ZGY_026 | 1/LA/1147:1154 | No text annotation | homologous HL_8P9A_138 HL_47171.1 | |
| HL_8ZGY_029 | 1/LA/1346:1356 | No text annotation | ||
| HL_8ZGY_030 | 1/LA/1402:1407 | GNRA | homologous HL_8CRE_029 NA | |
| HL_8ZGY_031 | 1/LA/1461:1469 | T-loop with 2 stacked bulged bases | homologous HL_8CRE_030 NA | |
| HL_8ZGY_032 | 1/LA/1505:1511 | Pseudoknot geometry with 3' bulge | homologous HL_8CRE_031 NA | |
| HL_8ZGY_033 | 1/LA/1543:1548 | GNRA variation | homologous HL_8CRE_032 NA | |
| HL_8ZGY_035 | 1/LA/1598:1607 | No text annotation | homologous HL_8CRE_034 NA | |
| HL_8ZGY_036 | 1/LA/1633:1638 | GNRA | homologous HL_8CRE_035 NA | |
| HL_8ZGY_037 | 1/LA/1679:1687 | Pseudoknot geometry | homologous HL_8P9A_148 HL_22758.1 | |
| HL_8ZGY_038 | 1/LA/1718:1724 | No text annotation | homologous HL_8P9A_149 HL_97067.1 | |
| HL_8ZGY_040 | 1/LA/1791:1795 | No text annotation | homologous HL_8CRE_039 NA | |
| HL_8ZGY_041 | 1/LA/1843:1850 | No text annotation | homologous HL_8CRE_040 NA | |
| HL_8ZGY_042 | 1/LA/1861:1867 | GNRA | homologous HL_8P9A_153 HL_34789.2 | |
| HL_8ZGY_043 | 1/LA/1922:1927 | UNCG | homologous HL_8CRE_042 NA | |
| HL_8ZGY_044 | 1/LA/2109:2113 | No text annotation | homologous HL_8CRE_043 NA | |
| HL_8ZGY_045 | 1/LA/2134:2144 | No text annotation | homologous HL_8P9A_157 HL_87681.1 | |
| HL_8ZGY_046 | 1/LA/2163:2169 | GNRA | homologous HL_8CRE_045 NA | |
| HL_8ZGY_047 | 1/LA/2219:2224 | GNRA | homologous HL_8P9A_159 HL_34789.2 | |
| HL_8ZGY_048 | 1/LA/2249:2265 | No text annotation | ||
| HL_8ZGY_049 | 1/LA/2291:2299 | No text annotation | homologous HL_8CRE_048 NA | |
| HL_8ZGY_050 | 1/LA/2368:2377 | No text annotation | homologous HL_8CRE_049 NA | |
| HL_8ZGY_052 | 1/LA/2567:2572 | No text annotation | ||
| HL_8ZGY_053 | 1/LA/2615:2623 | No text annotation | homologous HL_8P9A_165 HL_11974.2 | |
| HL_8ZGY_054 | 1/LA/2632:2644 | No text annotation | homologous HL_8P9A_166 HL_02042.1 | |
| HL_8ZGY_055 | 1/LA/2672:2680 | No text annotation | homologous HL_8P9A_167 HL_02452.1 | |
| HL_8ZGY_056 | 1/LA/2692:2699 | Pseudoknot geometry | homologous HL_8P9A_168 HL_52651.2 | |
| HL_8ZGY_057 | 1/LA/2723:2731 | No text annotation | homologous HL_8CRE_057 NA | |
| HL_8ZGY_058 | 1/LA/2743:2748 | GNRA | homologous HL_8CRE_058 NA | |
| HL_8ZGY_059 | 1/LA/2775:2783 | Pseudoknot geometry | homologous HL_8CRE_059 NA | |
| HL_8ZGY_060 | 1/LA/2839:2847 | No text annotation | homologous HL_8CRE_060 NA | |
| HL_8ZGY_061 | 1/LA/2896:2903 | GNRA variation | homologous HL_8P9A_173 HL_46665.2 | |
| HL_8ZGY_062 | 1/LA/2919:2925 | No text annotation | homologous HL_8CRE_062 NA | |
| HL_8ZGY_063 | 1/LA/2962:2967 | GNRA | homologous HL_8CRE_063 NA | |
| HL_8ZGY_064 | 1/LA/3024:3029 | GNRA | homologous HL_8CRE_064 NA | |
| HL_8ZGY_065 | 1/LA/3067:3072 | No text annotation | homologous HL_8P9A_177 HL_12125.2 | |
| HL_8ZGY_066 | 1/LA/3109:3123 | No text annotation | homologous HL_8CRE_066 NA | |
| HL_8ZGY_067 | 1/LA/3193:3196 | No text annotation | geometric HL_8P9A_116 HL_32346.6 | |
| HL_8ZGY_068 | 1/LA/3239:3246 | No text annotation | homologous HL_8P9A_180 HL_31089.1 | |
| HL_8ZGY_069 | 1/LA/3302:3310 | No text annotation | homologous HL_8CRE_069 NA | |
| HL_8ZGY_071 | 1/LB/36:41 | No text annotation | homologous HL_8OI5_069 HL_59381.2 | |
| HL_8ZGY_072 | 1/LB/88:93 | GNRA | homologous HL_8OI5_070 HL_34789.2 | |
| HL_8ZGY_073 | 1/LC/47:56 | No text annotation | homologous HL_8P9A_186 HL_17803.1 | |
| HL_8ZGY_074 | 1/LC/69:89 | No text annotation | homologous HL_8P9A_187 HL_68571.1 | |
| HL_8ZGY_075 | 1/LC/108:114 | No text annotation | homologous HL_8P9A_188 HL_13184.2 | |
| HL_8ZGY_076 | 1/LC/124:129 | No text annotation | homologous HL_8CRE_077 NA | |
| HL_8ZGY_077 | 1/S2/7:17 | No text annotation | geometric HL_8CRE_191 HL_73535.1 | |
| HL_8ZGY_082 | 1/S2/243:250 | No text annotation | ||
| HL_8ZGY_084 | 1/S2/330:338 | No text annotation | geometric HL_8CRE_198 HL_87268.1 | |
| HL_8ZGY_085 | 1/S2/367:374 | No text annotation | ||
| HL_8ZGY_086 | 1/S2/393:404 | No text annotation | geometric HL_8CRE_200 HL_86432.1 | |
| HL_8ZGY_087 | 1/S2/411:422 | No text annotation | ||
| HL_8ZGY_088 | 1/S2/450:456 | No text annotation | ||
| HL_8ZGY_091 | 1/S2/569:574 | No text annotation | geometric HL_8CRE_205 HL_93535.2 | |
| HL_8ZGY_092 | 1/S2/764:772 | No text annotation | geometric HL_8CRE_207 HL_11974.2 | |
| HL_8ZGY_095 | 1/S2/900:909 | No text annotation | geometric HL_8CRE_210 HL_38491.2 | |
| HL_8ZGY_096 | 1/S2/937:942 | GNRA | geometric HL_8P9A_210 HL_34789.2 | |
| HL_8ZGY_097 | 1/S2/997:1007 | No text annotation | geometric HL_4LFB_017 HL_38491.2 | |
| HL_8ZGY_099 | 1/S2/1084:1089 | GNRA | geometric HL_8CRE_214 HL_34789.2 | |
| HL_8ZGY_100 | 1/S2/1121:1126 | GNRA | geometric HL_8CRE_215 HL_34789.2 | |
| HL_8ZGY_101 | 1/S2/1188:1197 | No text annotation | geometric HL_8CRE_216 HL_97521.1 | |
| HL_8ZGY_102 | 1/S2/1238:1247 | No text annotation | ||
| HL_8ZGY_103 | 1/S2/1296:1301 | GNRA | geometric HL_8CRE_029 NA | |
| HL_8ZGY_104 | 1/S2/1309:1316 | T-loop related | geometric HL_8CRE_219 HL_63894.2 | |
| HL_8ZGY_106 | 1/S2/1396:1402 | GNRA related | geometric HL_8G9Z_003 HL_37569.2 | |
| HL_8ZGY_108 | 1/S2/1550:1561 | No text annotation | ||
| HL_8ZGY_109 | 1/S2/1594:1602 | No text annotation | ||
| HL_8ZGY_111 | 1/S2/1778:1783 | GNRA variation | geometric HL_8CRE_225 HL_34789.2 | |
| HL_8ZGY_113 | 1/Tb/32:40 | tRNA anticodon loop | homologous HL_5E81_212 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8ZGY_012 | No text annotation | ||
| HL_8ZGY_023 | No text annotation | ||
| HL_8ZGY_027 | No text annotation | ||
| HL_8ZGY_028 | No text annotation | ||
| HL_8ZGY_034 | No text annotation | ||
| HL_8ZGY_039 | No text annotation | ||
| HL_8ZGY_051 | No text annotation | ||
| HL_8ZGY_070 | No text annotation | ||
| HL_8ZGY_078 | No text annotation | ||
| HL_8ZGY_079 | No text annotation | ||
| HL_8ZGY_080 | No text annotation | ||
| HL_8ZGY_081 | No text annotation | ||
| HL_8ZGY_083 | No text annotation | ||
| HL_8ZGY_089 | No text annotation | ||
| HL_8ZGY_090 | No text annotation | ||
| HL_8ZGY_093 | No text annotation | ||
| HL_8ZGY_094 | No text annotation | ||
| HL_8ZGY_098 | No text annotation | ||
| HL_8ZGY_105 | No text annotation | ||
| HL_8ZGY_107 | GNRA | ||
| HL_8ZGY_110 | No text annotation | ||
| HL_8ZGY_112 | No text annotation | ||
| HL_8ZGY_114 | T-loop with 2 stacked bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8ZGY_001 | 1/LA/7:8, 1/LC/150:152 | No text annotation | homologous IL_8CRE_002 NA | |
| IL_8ZGY_002 | 1/LA/13:15, 1/LC/144:145 | Single bulged U | homologous IL_8P9A_232 IL_97561.2 | |
| IL_8ZGY_003 | 1/LA/27:28, 1/LA/56:58 | Single stack bend | homologous IL_8CRE_004 NA | |
| IL_8ZGY_004 | 1/LA/31:38, 1/LA/45:53 | tSH-tHW-tHH-tHS | homologous IL_8CRE_005 NA | |
| IL_8ZGY_005 | 1/LA/82:89, 1/LA/97:103 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8P9A_235 IL_53348.1 | |
| IL_8ZGY_006 | 1/LA/123:124, 1/LA/144:149 | No text annotation | homologous IL_8CRE_007 NA | |
| IL_8ZGY_007 | 1/LA/125:127, 1/LA/141:143 | Isolated non-canonical cWW pair | homologous IL_8CRE_008 NA | |
| IL_8ZGY_008 | 1/LA/163:166, 1/LA/256:258 | No text annotation | ||
| IL_8ZGY_009 | 1/LA/169:171, 1/LA/247:253 | No text annotation | ||
| IL_8ZGY_010 | 1/LA/177:178, 1/LA/238:241 | No text annotation | ||
| IL_8ZGY_011 | 1/LA/189:191, 1/LA/204:205 | No text annotation | homologous IL_8CRE_013 NA | |
| IL_8ZGY_012 | 1/LA/337:339, 1/LC/25:26 | Single bulged A | homologous IL_8CRE_014 NA | |
| IL_8ZGY_013 | 1/LA/376:379, 1/LA/390:403 | No text annotation | geometric IL_8CRE_015 NA | |
| IL_8ZGY_014 | 1/LA/404:410, 1/LC/13:19 | No text annotation | homologous IL_8P9A_244 IL_22311.1 | |
| IL_8ZGY_015 | 1/LA/429:431, 1/LA/627:629 | Isolated non-canonical cWW pair | homologous IL_8P9A_245 IL_71625.2 | |
| IL_8ZGY_016 | 1/LA/511:512, 1/LA/576:578 | Single bulged A | homologous IL_8CRE_020 NA | |
| IL_8ZGY_017 | 1/LA/516:524, 1/LA/566:572 | No text annotation | homologous IL_8P9A_247 IL_06606.1 | |
| IL_8ZGY_018 | 1/LA/530:537, 1/LA/552:560 | No text annotation | homologous IL_8CRE_022 NA | |
| IL_8ZGY_019 | 1/LA/667:669, 1/LA/791:793 | Isolated non-canonical cWW pair | homologous IL_8CRE_023 NA | |
| IL_8ZGY_020 | 1/LA/679:683, 1/LA/695:699 | No text annotation | homologous IL_8CRE_024 NA | |
| IL_8ZGY_021 | 1/LA/724:727, 1/LA/740:744 | UAA/GAN variation | homologous IL_8P9A_251 IL_45790.1 | |
| IL_8ZGY_022 | 1/LA/751:752, 1/LA/778:780 | Single bulged A | homologous IL_8CRE_026 NA | |
| IL_8ZGY_023 | 1/LA/754:755, 1/LA/774:776 | No text annotation | homologous IL_8CRE_027 NA | |
| IL_8ZGY_024 | 1/LA/757:762, 1/LA/767:772 | No text annotation | homologous IL_8CRE_028 NA | |
| IL_8ZGY_025 | 1/LA/802:804, 1/LA/937:939 | Isolated non-canonical cWW pair | homologous IL_8P9A_255 IL_01003.2 | |
| IL_8ZGY_026 | 1/LA/804:808, 1/LA/930:937 | No text annotation | homologous IL_8P9A_256 IL_73855.1 | |
| IL_8ZGY_027 | 1/LA/832:833, 1/LA/858:860 | No text annotation | homologous IL_8CRE_032 NA | |
| IL_8ZGY_028 | 1/LA/833:837, 1/LA/854:858 | Triple sheared | homologous IL_8CRE_033 NA | |
| IL_8ZGY_029 | 1/LA/868:871, 1/LA/887:889 | No text annotation | homologous IL_8CRE_034 NA | |
| IL_8ZGY_030 | 1/LA/872:874, 1/LA/885:886 | Single bulged U | homologous IL_8P9A_260 IL_97561.2 | |
| IL_8ZGY_031 | 1/LA/906:908, 1/LA/918:922 | No text annotation | homologous IL_8CRE_036 NA | |
| IL_8ZGY_032 | 1/LA/953:955, 1/LA/964:966 | Isolated non-canonical cWW pair | homologous IL_8P9A_262 IL_71625.2 | |
| IL_8ZGY_033 | 1/LA/968:969, 1/LA/1110:1112 | Single stack bend | homologous IL_8CRE_038 NA | |
| IL_8ZGY_034 | 1/LA/976:981, 1/LA/1100:1103 | No text annotation | ||
| IL_8ZGY_035 | 1/LA/982:984, 1/LA/1098:1099 | No text annotation | homologous IL_8CRE_040 NA | |
| IL_8ZGY_036 | 1/LA/990:996, 1/LA/1051:1057 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_8P9A_266 IL_94128.1 | |
| IL_8ZGY_037 | 1/LA/996:997, 1/LA/1049:1051 | Minor groove platform | homologous IL_8CRE_042 NA | |
| IL_8ZGY_038 | 1/LA/998:1003, 1/LA/1045:1048 | C-loop with bulged stacked A's | homologous IL_8CRE_043 NA | |
| IL_8ZGY_039 | 1/LA/1005:1010, 1/LA/1038:1043 | No text annotation | ||
| IL_8ZGY_040 | 1/LA/1012:1017, 1/LA/1033:1036 | No text annotation | ||
| IL_8ZGY_041 | 1/LA/1068:1070, 1/LA/1086:1088 | Isolated non-canonical cWW pair | homologous IL_8CRE_047 NA | |
| IL_8ZGY_042 | 1/LA/1073:1075, 1/LA/1082:1083 | No text annotation | homologous IL_8CRE_048 NA | |
| IL_8ZGY_043 | 1/LA/1119:1121, 1/LA/1135:1137 | Isolated non-canonical cWW pair | homologous IL_8P9A_274 IL_01003.2 | |
| IL_8ZGY_045 | 1/LA/1166:1170, 1/LA/1327:1331 | UAA/GAN | homologous IL_8CRE_051 NA | |
| IL_8ZGY_046 | 1/LA/1172:1179, 1/LA/1324:1325 | SSU/LSU pseudoknot | homologous IL_8P9A_277 IL_07396.1 | |
| IL_8ZGY_047 | 1/LA/1179:1181, 1/LA/1323:1324 | Single bulged U | homologous IL_8P9A_278 IL_97561.2 | |
| IL_8ZGY_048 | 1/LA/1186:1193, 1/LA/1313:1318 | No text annotation | homologous IL_8CRE_054 NA | |
| IL_8ZGY_049 | 1/LA/1193:1204, 1/LA/1298:1313 | No text annotation | homologous IL_8CRE_055 NA | |
| IL_8ZGY_050 | 1/LA/1206:1208, 1/LA/1295:1296 | No text annotation | homologous IL_8CRE_056 NA | |
| IL_8ZGY_051 | 1/LA/1217:1225, 1/LA/1282:1286 | No text annotation | ||
| IL_8ZGY_054 | 1/LA/1375:1377, 1/LA/1427:1430 | No text annotation | homologous IL_8P9A_285 IL_42997.5 | |
| IL_8ZGY_055 | 1/LA/1384:1386, 1/LA/1419:1420 | Single bulged A | homologous IL_8CRE_062 NA | |
| IL_8ZGY_056 | 1/LA/1387:1394, 1/LA/1414:1418 | Kink-turn | homologous IL_8CRE_063 NA | |
| IL_8ZGY_057 | 1/LA/1397:1399, 1/LA/1410:1411 | Single bulged A | homologous IL_8P9A_288 IL_14190.2 | |
| IL_8ZGY_058 | 1/LA/1443:1449, 1/LA/2353:2358 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_8CRE_065 NA | |
| IL_8ZGY_059 | 1/LA/1500:1504, 1/LA/1512:1514 | C-loop | homologous IL_8P9A_290 IL_63596.12 | |
| IL_8ZGY_060 | 1/LA/1531:1535, 1/LA/1584:1589 | UAA/GAN | homologous IL_8CRE_067 NA | |
| IL_8ZGY_061 | 1/LA/1617:1620, 1/LA/1823:1825 | No text annotation | homologous IL_8CRE_069 NA | |
| IL_8ZGY_062 | 1/LA/1622:1624, 1/LA/1817:1821 | No text annotation | ||
| IL_8ZGY_063 | 1/LA/1625:1630, 1/LA/1810:1816 | No text annotation | ||
| IL_8ZGY_064 | 1/LA/1644:1648, 1/LA/1805:1809 | Triple sheared | homologous IL_8CRE_072 NA | |
| IL_8ZGY_065 | 1/LA/1660:1662, 1/LA/1785:1787 | Isolated non-canonical cWW pair | homologous IL_8CRE_073 NA | |
| IL_8ZGY_066 | 1/LA/1668:1669, 1/LA/1777:1779 | Single bulged C | homologous IL_8P9A_297 IL_05642.2 | |
| IL_8ZGY_067 | 1/LA/1669:1670, 1/LA/1775:1777 | Single stack bend | homologous IL_8CRE_075 NA | |
| IL_8ZGY_068 | 1/LA/1693:1697, 1/LA/1746:1751 | No text annotation | homologous IL_8P9A_299 IL_25943.1 | |
| IL_8ZGY_069 | 1/LA/1701:1706, 1/LA/1736:1742 | No text annotation | homologous IL_8P9A_300 IL_00680.1 | |
| IL_8ZGY_070 | 1/LA/1710:1716, 1/LA/1726:1732 | No text annotation | homologous IL_8P9A_301 IL_93476.1 | |
| IL_8ZGY_071 | 1/LA/1882:1888, 1/LA/2345:2348 | No text annotation | homologous IL_8CRE_079 NA | |
| IL_8ZGY_072 | 1/LA/1894:1896, 1/LA/2337:2339 | No text annotation | homologous IL_8P9A_303 IL_10432.1 | |
| IL_8ZGY_073 | 1/LA/1897:1900, 1/LA/2335:2336 | Major groove platform; stack outside cWW | geometric IL_8P9A_304 IL_74641.2 | |
| IL_8ZGY_074 | 1/LA/1897:1905, 1/LA/2332:2336 | No text annotation | geometric IL_8CRE_082 NA | |
| IL_8ZGY_075 | 1/LA/1900:1905, 1/LA/2332:2335 | No text annotation | homologous IL_8CRE_083 NA | |
| IL_8ZGY_076 | 1/LA/1917:1922, 1/LA/1927:1933 | No text annotation | homologous IL_8CRE_084 NA | |
| IL_8ZGY_077 | 1/LA/1939:1941, 1/LA/2105:2107 | Isolated non-canonical cWW pair | homologous IL_8CRE_085 NA | |
| IL_8ZGY_078 | 1/LA/1946:1947, 1/LA/2097:2100 | No text annotation | homologous IL_8P9A_309 IL_18824.1 | |
| IL_8ZGY_080 | 1/LA/2127:2128, 1/LA/2322:2324 | Single bulged A | homologous IL_8CRE_087 NA | |
| IL_8ZGY_081 | 1/LA/2155:2160, 1/LA/2172:2179 | No text annotation | homologous IL_8CRE_088 NA | |
| IL_8ZGY_082 | 1/LA/2195:2198, 1/LA/2244:2245 | Minor groove platform, major groove intercalation | homologous IL_8P9A_312 IL_55206.1 | |
| IL_8ZGY_083 | 1/LA/2199:2200, 1/LA/2240:2243 | No text annotation | homologous IL_8CRE_090 NA | |
| IL_8ZGY_084 | 1/LA/2203:2209, 1/LA/2234:2237 | No text annotation | ||
| IL_8ZGY_085 | 1/LA/2210:2216, 1/LA/2227:2233 | No text annotation | homologous IL_8CRE_093 NA | |
| IL_8ZGY_086 | 1/LA/2275:2276, 1/LA/2306:2309 | No text annotation | geometric IL_8CRE_094 NA | |
| IL_8ZGY_087 | 1/LA/2276:2287, 1/LA/2303:2306 | No text annotation | homologous IL_8CRE_095 NA | |
| IL_8ZGY_088 | 1/LA/2390:2393, 1/LA/2985:2987 | No text annotation | homologous IL_8P9A_319 IL_75527.2 | |
| IL_8ZGY_089 | 1/LA/2395:2397, 1/LA/2980:2983 | No text annotation | homologous IL_8CRE_097 NA | |
| IL_8ZGY_090 | 1/LA/2408:2410, 1/LA/2810:2811 | No text annotation | homologous IL_8CRE_098 NA | |
| IL_8ZGY_091 | 1/LA/2411:2412, 1/LA/2806:2809 | Minor groove platform | homologous IL_8CRE_099 NA | |
| IL_8ZGY_092 | 1/LA/2422:2424, 1/LA/2603:2606 | No text annotation | homologous IL_8CRE_100 NA | |
| IL_8ZGY_094 | 1/LA/2519:2525, 1/LA/2583:2586 | No text annotation | homologous IL_8CRE_106 NA | |
| IL_8ZGY_095 | 1/LA/2613:2614, 1/LA/2624:2626 | Single bulged A | homologous IL_8P9A_325 IL_14190.2 | |
| IL_8ZGY_096 | 1/LA/2665:2667, 1/LA/2685:2689 | No text annotation | homologous IL_8P9A_326 IL_14250.1 | |
| IL_8ZGY_097 | 1/LA/2717:2720, 1/LA/2734:2737 | Tandem non-canonical cWW pairs | homologous IL_8P9A_327 IL_15225.2 | |
| IL_8ZGY_098 | 1/LA/2769:2772, 1/LA/2786:2787 | No text annotation | homologous IL_8CRE_110 NA | |
| IL_8ZGY_099 | 1/LA/2822:2823, 1/LA/2864:2866 | Major groove platform | homologous IL_8P9A_329 IL_48076.8 | |
| IL_8ZGY_100 | 1/LA/2823:2825, 1/LA/2862:2864 | Isolated non-canonical cWW pair | homologous IL_8P9A_330 IL_01003.2 | |
| IL_8ZGY_101 | 1/LA/2825:2827, 1/LA/2861:2862 | No text annotation | homologous IL_8P9A_331 IL_46637.2 | |
| IL_8ZGY_102 | 1/LA/2827:2829, 1/LA/2857:2861 | No text annotation | homologous IL_8CRE_113 NA | |
| IL_8ZGY_103 | 1/LA/2834:2838, 1/LA/2848:2852 | Double sheared with non-canonical cWW | homologous IL_8CRE_114 NA | |
| IL_8ZGY_104 | 1/LA/2875:2876, 1/LA/2948:2950 | No text annotation | homologous IL_8CRE_115 NA | |
| IL_8ZGY_105 | 1/LA/2878:2880, 1/LA/2942:2946 | Isolated non-canonical cWW with bulges | homologous IL_8CRE_116 NA | |
| IL_8ZGY_106 | 1/LA/2880:2881, 1/LA/2939:2942 | No text annotation | homologous IL_8P9A_336 IL_44609.2 | |
| IL_8ZGY_107 | 1/LA/2888:2890, 1/LA/2911:2913 | Isolated non-canonical cWW pair | geometric IL_8P9A_337 IL_01003.2 | |
| IL_8ZGY_108 | 1/LA/2888:2891, 1/LA/2908:2913 | No text annotation | geometric IL_8P9A_338 IL_07469.3 | |
| IL_8ZGY_109 | 1/LA/2890:2891, 1/LA/2908:2911 | No text annotation | homologous IL_8CRE_120 NA | |
| IL_8ZGY_110 | 1/LA/2917:2919, 1/LA/2925:2927 | Isolated non-canonical cWW pair | homologous IL_8CRE_121 NA | |
| IL_8ZGY_111 | 1/LA/2959:2960, 1/LA/2969:2971 | Single bulged A | geometric IL_1U9S_001 IL_14190.2 | |
| IL_8ZGY_112 | 1/LA/3003:3006, 1/LA/3138:3143 | Double sheared | homologous IL_8P9A_342 IL_58355.2 | |
| IL_8ZGY_113 | 1/LA/3011:3013, 1/LA/3039:3041 | Isolated non-canonical cWW pair | homologous IL_8P9A_343 IL_71625.2 | |
| IL_8ZGY_114 | 1/LA/3017:3024, 1/LA/3029:3035 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8P9A_344 IL_62167.2 | |
| IL_8ZGY_115 | 1/LA/3046:3050, 1/LA/3090:3093 | No text annotation | homologous IL_8P9A_345 IL_06671.1 | |
| IL_8ZGY_116 | 1/LA/3053:3058, 1/LA/3083:3087 | No text annotation | homologous IL_8P9A_346 IL_98200.1 | |
| IL_8ZGY_117 | 1/LA/3062:3063, 1/LA/3076:3079 | No text annotation | homologous IL_8P9A_347 NA | |
| IL_8ZGY_118 | 1/LA/3102:3106, 1/LA/3126:3130 | UAA/GAN | homologous IL_8CRE_129 NA | |
| IL_8ZGY_119 | 1/LA/3157:3158, 1/LA/3290:3292 | Single stack bend | geometric IL_8CRE_091 NA | |
| IL_8ZGY_120 | 1/LA/3163:3165, 1/LA/3283:3285 | Isolated non-canonical cWW pair | homologous IL_8CRE_130 NA | |
| IL_8ZGY_121 | 1/LA/3166:3169, 1/LA/3279:3282 | No text annotation | ||
| IL_8ZGY_122 | 1/LA/3176:3178, 1/LA/3209:3210 | Single bulged A | homologous IL_8P9A_351 IL_14190.2 | |
| IL_8ZGY_123 | 1/LA/3178:3187, 1/LA/3203:3209 | No text annotation | homologous IL_8CRE_132 NA | |
| IL_8ZGY_124 | 1/LA/3192:3193, 1/LA/3196:3198 | Single bulged U | geometric IL_5J7L_298 NA | |
| IL_8ZGY_125 | 1/LA/3224:3228, 1/LA/3257:3259 | No text annotation | homologous IL_8CRE_133 NA | |
| IL_8ZGY_126 | 1/LA/3232:3234, 1/LA/3251:3253 | Isolated non-canonical cWW pair | homologous IL_8P9A_354 IL_01003.2 | |
| IL_8ZGY_127 | 1/LA/3234:3237, 1/LA/3248:3251 | Tandem non-canonical cWW pairs | homologous IL_8CRE_134 NA | |
| IL_8ZGY_128 | 1/LA/3299:3302, 1/LA/3310:3313 | Tandem non-canonical cWW pairs | homologous IL_8CRE_135 NA | |
| IL_8ZGY_129 | 1/LA/3317:3319, 1/LA/3386:3387 | No text annotation | homologous IL_8CRE_136 NA | |
| IL_8ZGY_130 | 1/LA/3323:3324, 1/LA/3380:3382 | Single bulged U | homologous IL_8P9A_358 IL_97561.2 | |
| IL_8ZGY_131 | 1/LA/3327:3329, 1/LA/3372:3377 | No text annotation | homologous IL_8CRE_138 NA | |
| IL_8ZGY_132 | 1/LA/3331:3336, 1/LA/3366:3370 | No text annotation | homologous IL_8CRE_139 NA | |
| IL_8ZGY_133 | 1/LA/3339:3341, 1/LA/3362:3363 | No text annotation | homologous IL_8CRE_140 NA | |
| IL_8ZGY_134 | 1/LA/3341:3344, 1/LA/3359:3362 | Double sheared; A in syn | homologous IL_8P9A_362 IL_58355.2 | |
| IL_8ZGY_136 | 1/LB/15:16, 1/LB/63:65 | Single bulged A | homologous IL_8P9A_364 IL_14190.2 | |
| IL_8ZGY_137 | 1/LB/21:27, 1/LB/53:58 | No text annotation | homologous IL_8OI5_135 IL_41504.1 | |
| IL_8ZGY_138 | 1/LB/28:29, 1/LB/49:52 | No text annotation | homologous IL_8OI5_136 IL_87975.1 | |
| IL_8ZGY_139 | 1/LB/29:30, 1/LB/47:49 | Single stack bend | homologous IL_8OI5_137 IL_15011.2 | |
| IL_8ZGY_140 | 1/LB/32:36, 1/LB/41:45 | No text annotation | homologous IL_8OI5_138 IL_58103.12 | |
| IL_8ZGY_141 | 1/LB/72:80, 1/LB/100:106 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8P9A_369 IL_62167.2 | |
| IL_8ZGY_142 | 1/LB/84:87, 1/LB/94:96 | Isolated non-canonical cWW pair | homologous IL_8OI5_140 IL_01003.2 | |
| IL_8ZGY_143 | 1/LC/64:66, 1/LC/93:96 | Isolated non-canonical cWW with bulges | homologous IL_8P9A_371 IL_76400.1 | |
| IL_8ZGY_144 | 1/LC/68:69, 1/LC/89:91 | Single bulged U | homologous IL_8P9A_372 IL_97561.2 | |
| IL_8ZGY_145 | 1/S2/24:26, 1/S2/600:601 | Single bulged C | geometric IL_8F5G_002 IL_05642.2 | |
| IL_8ZGY_146 | 1/S2/37:41, 1/S2/466:471 | No text annotation | geometric IL_8CRE_392 IL_12697.1 | |
| IL_8ZGY_147 | 1/S2/42:48, 1/S2/431:433 | No text annotation | geometric IL_8P9A_376 IL_88082.2 | |
| IL_8ZGY_148 | 1/S2/50:52, 1/S2/428:429 | Minor groove platform | geometric IL_8CRE_394 IL_34520.2 | |
| IL_8ZGY_149 | 1/S2/58:63, 1/S2/87:89 | No text annotation | geometric IL_8P9A_378 IL_61299.6 | |
| IL_8ZGY_150 | 1/S2/64:69, 1/S2/82:86 | No text annotation | ||
| IL_8ZGY_151 | 1/S2/109:112, 1/S2/302:305 | Tandem non-canonical cWW pairs | geometric IL_8P9A_380 IL_71194.2 | |
| IL_8ZGY_152 | 1/S2/113:116, 1/S2/300:301 | Other IL | geometric IL_1J9H_005 NA | |
| IL_8ZGY_153 | 1/S2/116:122, 1/S2/295:300 | No text annotation | ||
| IL_8ZGY_157 | 1/S2/204:206, 1/S2/259:263 | No text annotation | ||
| IL_8ZGY_161 | 1/S2/311:316, 1/S2/348:355 | Kink-turn with non-sequential stacking | geometric IL_8CRE_408 IL_46174.4 | |
| IL_8ZGY_162 | 1/S2/318:323, 1/S2/345:346 | No text annotation | ||
| IL_8ZGY_163 | 1/S2/363:365, 1/S2/376:381 | No text annotation | geometric IL_8CRE_410 IL_93336.1 | |
| IL_8ZGY_164 | 1/S2/389:391, 1/S2/406:408 | Isolated cWH basepair | geometric IL_8CRE_411 IL_10892.2 | |
| IL_8ZGY_166 | 1/S2/443:448, 1/S2/458:461 | No text annotation | ||
| IL_8ZGY_171 | 1/S2/550:557, 1/S2/587:588 | No text annotation | ||
| IL_8ZGY_172 | 1/S2/557:559, 1/S2/586:587 | No text annotation | geometric IL_8CRE_053 NA | |
| IL_8ZGY_173 | 1/S2/562:568, 1/S2/575:583 | No text annotation | geometric IL_8CRE_423 IL_52042.1 | |
| IL_8ZGY_174 | 1/S2/616:622, 1/S2/1104:1105 | No text annotation | geometric IL_8CRE_424 IL_20847.1 | |
| IL_8ZGY_175 | 1/S2/624:626, 1/S2/973:975 | Isolated non-canonical cWW pair | geometric IL_8CRE_425 IL_01003.2 | |
| IL_8ZGY_176 | 1/S2/627:631, 1/S2/968:972 | tSH-tHW-tHS | geometric IL_8CRE_426 IL_05821.1 | |
| IL_8ZGY_179 | 1/S2/746:747, 1/S2/802:805 | No text annotation | geometric IL_8P9A_412 IL_73108.2 | |
| IL_8ZGY_180 | 1/S2/748:750, 1/S2/799:801 | Isolated non-canonical cWW pair | geometric IL_8P9A_413 IL_71625.2 | |
| IL_8ZGY_181 | 1/S2/751:759, 1/S2/791:798 | No text annotation | ||
| IL_8ZGY_182 | 1/S2/817:822, 1/S2/850:854 | No text annotation | ||
| IL_8ZGY_183 | 1/S2/865:866, 1/S2/962:965 | Major groove platform; stack outside cWW | geometric IL_6N5P_003 IL_74641.2 | |
| IL_8ZGY_184 | 1/S2/868:869, 1/S2/958:960 | Single bulged U | geometric IL_8P9A_372 IL_97561.2 | |
| IL_8ZGY_185 | 1/S2/871:873, 1/S2/954:956 | Isolated non-canonical cWW pair | geometric IL_7QUA_003 IL_01003.2 | |
| IL_8ZGY_186 | 1/S2/874:878, 1/S2/950:953 | Tandem non-canonical cWW pairs | geometric IL_8CRE_434 IL_15225.2 | |
| IL_8ZGY_187 | 1/S2/885:888, 1/S2/924:927 | Tandem non-canonical cWW pairs | geometric IL_8P9A_421 IL_15225.2 | |
| IL_8ZGY_188 | 1/S2/893:899, 1/S2/910:919 | No text annotation | ||
| IL_8ZGY_189 | 1/S2/985:990, 1/S2/1014:1016 | No text annotation | geometric IL_8CRE_437 IL_31359.1 | |
| IL_8ZGY_190 | 1/S2/990:994, 1/S2/1010:1014 | tSH-tHW-tHS | geometric IL_4WF9_052 IL_05821.1 | |
| IL_8ZGY_191 | 1/S2/1034:1036, 1/S2/1095:1101 | No text annotation | geometric IL_8CRE_439 IL_82706.2 | |
| IL_8ZGY_192 | 1/S2/1041:1044, 1/S2/1074:1077 | Tandem non-canonical cWW pairs | geometric IL_8CRE_440 IL_15225.2 | |
| IL_8ZGY_193 | 1/S2/1051:1053, 1/S2/1066:1067 | Single bulged U | geometric IL_3TZR_002 IL_97561.2 | |
| IL_8ZGY_194 | 1/S2/1055:1058, 1/S2/1061:1064 | No text annotation | ||
| IL_8ZGY_195 | 1/S2/1111:1118, 1/S2/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | geometric IL_8CRE_442 IL_84044.1 | |
| IL_8ZGY_196 | 1/S2/1146:1147, 1/S2/1630:1632 | Single bulged A | geometric IL_5J7L_039 NA | |
| IL_8ZGY_197 | 1/S2/1149:1151, 1/S2/1627:1628 | Single bulged G | geometric IL_5J7L_040 NA | |
| IL_8ZGY_198 | 1/S2/1157:1160, 1/S2/1617:1621 | C-loop | geometric IL_8CRE_445 IL_63596.12 | |
| IL_8ZGY_199 | 1/S2/1173:1175, 1/S2/1464:1466 | Isolated non-canonical cWW pair | geometric IL_5UNE_006 IL_38565.2 | |
| IL_8ZGY_200 | 1/S2/1178:1179, 1/S2/1459:1461 | Minor groove platform | geometric IL_5J7L_042 NA | |
| IL_8ZGY_202 | 1/S2/1224:1233, 1/S2/1252:1259 | No text annotation | ||
| IL_8ZGY_204 | 1/S2/1268:1270, 1/S2/1440:1441 | Single bulged U | geometric IL_8P9A_437 IL_97561.2 | |
| IL_8ZGY_205 | 1/S2/1272:1278, 1/S2/1430:1438 | No text annotation | geometric IL_8P9A_439 IL_99893.1 | |
| IL_8ZGY_206 | 1/S2/1280:1281, 1/S2/1426:1428 | Single bulged A | geometric IL_8CRE_455 IL_14190.2 | |
| IL_8ZGY_207 | 1/S2/1283:1285, 1/S2/1421:1424 | No text annotation | ||
| IL_8ZGY_208 | 1/S2/1290:1292, 1/S2/1323:1325 | Isolated cWH basepair | geometric IL_8P9A_442 IL_10892.2 | |
| IL_8ZGY_209 | 1/S2/1306:1308, 1/S2/1317:1318 | Minor groove platform | geometric IL_8P9A_377 IL_34520.2 | |
| IL_8ZGY_210 | 1/S2/1339:1342, 1/S2/1383:1385 | No text annotation | ||
| IL_8ZGY_211 | 1/S2/1343:1348, 1/S2/1377:1382 | No text annotation | ||
| IL_8ZGY_214 | 1/S2/1480:1487, 1/S2/1519:1527 | No text annotation | geometric IL_8CRE_462 IL_91698.1 | |
| IL_8ZGY_217 | 1/S2/1540:1546, 1/S2/1565:1571 | No text annotation | ||
| IL_8ZGY_218 | 1/S2/1636:1638, 1/S2/1764:1767 | No text annotation | geometric IL_8CRE_466 IL_18228.1 | |
| IL_8ZGY_219 | 1/S2/1638:1641, 1/S2/1760:1764 | No text annotation | geometric IL_8CRE_467 IL_25873.2 | |
| IL_8ZGY_220 | 1/S2/1642:1644, 1/S2/1757:1759 | Isolated non-canonical cWW pair | geometric IL_5MWI_002 IL_01003.2 | |
| IL_8ZGY_221 | 1/S2/1644:1647, 1/S2/1753:1757 | No text annotation | ||
| IL_8ZGY_222 | 1/S2/1650:1652, 1/S2/1748:1750 | Isolated non-canonical cWW pair | geometric IL_8P9A_456 IL_01003.2 | |
| IL_8ZGY_223 | 1/S2/1653:1656, 1/S2/1744:1747 | Double sheared | geometric IL_8P9A_457 IL_58355.2 | |
| IL_8ZGY_224 | 1/S2/1656:1658, 1/S2/1743:1744 | Single bulged U | geometric IL_8P9A_458 IL_97561.2 | |
| IL_8ZGY_226 | 1/S2/1665:1667, 1/S2/1734:1736 | Isolated non-canonical cWW pair | geometric IL_7A0S_107 IL_71625.2 | |
| IL_8ZGY_227 | 1/S2/1669:1672, 1/S2/1729:1732 | Double sheared | geometric IL_8CRE_474 IL_58355.2 | |
| IL_8ZGY_228 | 1/S2/1672:1674, 1/S2/1727:1729 | Isolated non-canonical cWW contact | geometric IL_5UNE_009 IL_87720.1 | |
| IL_8ZGY_229 | 1/S2/1675:1678, 1/S2/1723:1726 | Tandem non-canonical cWW pairs | geometric IL_8P9A_462 IL_71194.2 | |
| IL_8ZGY_230 | 1/S2/1678:1682, 1/S2/1719:1723 | Triple sheared | geometric IL_8CRE_476 IL_15190.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8ZGY_044 | No text annotation | ||
| IL_8ZGY_052 | No text annotation | ||
| IL_8ZGY_053 | No text annotation | ||
| IL_8ZGY_079 | No text annotation | ||
| IL_8ZGY_093 | No text annotation | ||
| IL_8ZGY_135 | No text annotation | ||
| IL_8ZGY_154 | No text annotation | ||
| IL_8ZGY_155 | No text annotation | ||
| IL_8ZGY_156 | No text annotation | ||
| IL_8ZGY_158 | Isolated non-canonical cWW pair | ||
| IL_8ZGY_159 | No text annotation | ||
| IL_8ZGY_160 | No text annotation | ||
| IL_8ZGY_165 | Single bulged U | ||
| IL_8ZGY_167 | No text annotation | ||
| IL_8ZGY_168 | No text annotation | ||
| IL_8ZGY_169 | No text annotation | ||
| IL_8ZGY_170 | No text annotation | ||
| IL_8ZGY_177 | No text annotation | ||
| IL_8ZGY_178 | No text annotation | ||
| IL_8ZGY_201 | Isolated cWH basepair | ||
| IL_8ZGY_203 | No text annotation | ||
| IL_8ZGY_212 | No text annotation | ||
| IL_8ZGY_213 | No text annotation | ||
| IL_8ZGY_215 | No text annotation | ||
| IL_8ZGY_216 | No text annotation | ||
| IL_8ZGY_225 | No text annotation | ||
| IL_8ZGY_231 | No text annotation | ||
| IL_8ZGY_232 | No text annotation | ||
| IL_8ZGY_233 | No text annotation | ||
| IL_8ZGY_234 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8ZGY_001 | 1/LA/113:123, 1/LA/149:158, 1/LA/263:267 | No text annotation | homologous J3_8CRE_001 NA | |
| J3_8ZGY_002 | 1/LA/113:124, 1/LA/144:158, 1/LA/263:267 | No text annotation | ||
| J3_8ZGY_003 | 1/LA/185:189, 1/LA/205:214, 1/LA/226:231 | No text annotation | homologous J3_8P9A_044 J3_97456.1 | |
| J3_8ZGY_004 | 1/LA/340:356, 1/LA/363:368, 1/LC/21:24 | No text annotation | homologous J3_8P9A_045 J3_07616.1 | |
| J3_8ZGY_005 | 1/LA/369:376, 1/LA/403:404, 1/LC/19:20 | No text annotation | geometric J3_8CRE_005 NA | |
| J3_8ZGY_006 | 1/LA/369:379, 1/LA/390:404, 1/LC/19:20 | No text annotation | homologous J3_8CRE_006 NA | |
| J3_8ZGY_007 | 1/LA/501:502, 1/LA/587:596, 1/LA/605:610 | No text annotation | homologous J3_8P9A_048 J3_86133.1 | |
| J3_8ZGY_008 | 1/LA/813:819, 1/LA/904:906, 1/LA/922:925 | No text annotation | homologous J3_8CRE_009 NA | |
| J3_8ZGY_009 | 1/LA/827:830, 1/LA/862:866, 1/LA/891:896 | No text annotation | homologous J3_8P9A_050 J3_21998.1 | |
| J3_8ZGY_010 | 1/LA/985:986, 1/LA/1061:1065, 1/LA/1091:1097 | No text annotation | homologous J3_8CRE_011 NA | |
| J3_8ZGY_012 | 1/LA/1478:1484, 1/LA/1856:1858, 1/LA/1870:1873 | No text annotation | homologous J3_8CRE_013 NA | |
| J3_8ZGY_013 | 1/LA/1487:1490, 1/LA/1836:1842, 1/LA/1851:1853 | No text annotation | homologous J3_8P9A_054 J3_76012.1 | |
| J3_8ZGY_014 | 1/LA/1525:1530, 1/LA/1590:1594, 1/LA/1611:1612 | No text annotation | homologous J3_8CRE_015 NA | |
| J3_8ZGY_015 | 1/LA/1536:1541, 1/LA/1550:1559, 1/LA/1578:1583 | No text annotation | ||
| J3_8ZGY_016 | 1/LA/1630:1631, 1/LA/1640:1644, 1/LA/1809:1810 | No text annotation | homologous J3_8CRE_017 NA | |
| J3_8ZGY_017 | 1/LA/1653:1657, 1/LA/1790:1791, 1/LA/1795:1800 | No text annotation | homologous J3_8P9A_058 J3_08594.1 | |
| J3_8ZGY_018 | 1/LA/2431:2434, 1/LA/2511:2516, 1/LA/2589:2596 | No text annotation | homologous J3_8CRE_019 NA | |
| J3_8ZGY_019 | 1/LA/2528:2532, 1/LA/2545:2562, 1/LA/2577:2580 | No text annotation | homologous J3_8CRE_020 NA | |
| J3_8ZGY_020 | 1/LA/2650:2652, 1/LA/2753:2764, 1/LA/2792:2797 | No text annotation | homologous J3_8CRE_021 NA | |
| J3_8ZGY_021 | 1/LA/2663:2665, 1/LA/2689:2691, 1/LA/2700:2705 | No text annotation | homologous J3_8P9A_062 J3_05327.1 | |
| J3_8ZGY_022 | 1/LA/2885:2888, 1/LA/2913:2915, 1/LA/2929:2935 | No text annotation | homologous J3_8CRE_023 NA | |
| J3_8ZGY_023 | 1/LA/3170:3175, 1/LA/3211:3219, 1/LA/3264:3278 | No text annotation | ||
| J3_8ZGY_024 | 1/LA/3297:3299, 1/LA/3313:3317, 1/LA/3387:3389 | No text annotation | homologous J3_8P9A_065 J3_81015.1 | |
| J3_8ZGY_025 | 1/LB/9:14, 1/LB/66:67, 1/LB/111:112 | No text annotation | homologous J3_8P9A_066 J3_26985.1 | |
| J3_8ZGY_026 | 1/LC/44:45, 1/LC/58:64, 1/LC/96:100 | No text annotation | homologous J3_8P9A_067 J3_01004.1 | |
| J3_8ZGY_027 | 1/S2/41:42, 1/S2/433:439, 1/S2/464:466 | No text annotation | geometric J3_8CRE_071 J3_58657.1 | |
| J3_8ZGY_028 | 1/S2/213:228, 1/S2/237:243, 1/S2/250:252 | No text annotation | ||
| J3_8ZGY_029 | 1/S2/633:635, 1/S2/861:865, 1/S2/965:966 | No text annotation | geometric J3_8P9A_071 J3_01633.1 | |
| J3_8ZGY_030 | 1/S2/633:635, 1/S2/861:866, 1/S2/962:966 | No text annotation | geometric J3_8P9A_072 J3_17385.5 | |
| J3_8ZGY_031 | 1/S2/760:763, 1/S2/773:775, 1/S2/785:790 | No text annotation | geometric J3_8P9A_073 J3_97642.2 | |
| J3_8ZGY_032 | 1/S2/881:884, 1/S2/928:936, 1/S2/943:947 | No text annotation | geometric J3_8P9A_074 J3_23895.1 | |
| J3_8ZGY_033 | 1/S2/1037:1039, 1/S2/1079:1083, 1/S2/1090:1094 | No text annotation | geometric J3_8CRE_077 J3_94999.1 | |
| J3_8ZGY_034 | 1/S2/1161:1164, 1/S2/1581:1587, 1/S2/1609:1616 | No text annotation | geometric J3_8P9A_076 J3_85722.1 | |
| J3_8ZGY_035 | 1/S2/1168:1171, 1/S2/1468:1470, 1/S2/1574:1577 | No text annotation | geometric J3_8CRE_079 J3_44359.1 | |
| J3_8ZGY_036 | 1/S2/1180:1187, 1/S2/1198:1209, 1/S2/1454:1458 | No text annotation | ||
| J3_8ZGY_037 | 1/S2/1215:1220, 1/S2/1263:1267, 1/S2/1442:1448 | No text annotation | geometric J3_8CRE_081 J3_87797.2 | |
| J3_8ZGY_038 | 1/S2/1285:1288, 1/S2/1327:1332, 1/S2/1419:1421 | No text annotation | ||
| J3_8ZGY_039 | 1/S2/1293:1294, 1/S2/1303:1306, 1/S2/1318:1322 | No text annotation | geometric J3_8CRE_083 J3_76043.4 | |
| J3_8ZGY_040 | 1/S2/1336:1338, 1/S2/1386:1389, 1/S2/1412:1415 | No text annotation | geometric J3_8CRE_084 J3_82365.5 | |
| J3_8ZGY_041 | 1/S2/1336:1338, 1/S2/1386:1391, 1/S2/1407:1415 | No text annotation | ||
| J3_8ZGY_042 | 1/S2/1470:1474, 1/S2/1533:1540, 1/S2/1571:1574 | No text annotation | geometric J3_8CRE_086 J3_03192.1 | |
| J4_8ZGY_001 | 1/LA/112:113, 1/LA/267:272, 1/LA/293:299, 1/LA/316:319 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
| J4_8ZGY_002 | 1/LA/185:189, 1/LA/205:208, 1/LA/212:214, 1/LA/226:231 | No text annotation | homologous J4_8P9A_013 J4_43318.1 | |
| J4_8ZGY_003 | 1/LA/1450:1456, 1/LA/1474:1475, 1/LA/1876:1879, 1/LA/2351:2352 | No text annotation | homologous J4_8P9A_014 J4_34212.1 | |
| J4_8ZGY_004 | 1/LA/1491:1495, 1/LA/1519:1524, 1/LA/1613:1614, 1/LA/1828:1835 | No text annotation | homologous J4_8CRE_004 NA | |
| J4_8ZGY_005 | 1/LA/1673:1674, 1/LA/1692:1693, 1/LA/1751:1752, 1/LA/1771:1772 | No text annotation | homologous J4_8P9A_016 J4_75575.1 | |
| J4_8ZGY_006 | 1/LA/2129:2133, 1/LA/2145:2149, 1/LA/2185:2189, 1/LA/2316:2321 | No text annotation | homologous J4_8CRE_006 NA | |
| J4_8ZGY_007 | 1/LA/2191:2193, 1/LA/2247:2248, 1/LA/2266:2275, 1/LA/2309:2314 | No text annotation | homologous J4_8P9A_018 J4_42306.1 | |
| J4_8ZGY_008 | 1/LA/2653:2657, 1/LA/2711:2715, 1/LA/2739:2741, 1/LA/2750:2752 | No text annotation | homologous J4_8CRE_008 NA | |
| J4_8ZGY_009 | 1/LA/3009:3011, 1/LA/3041:3042, 1/LA/3097:3099, 1/LA/3133:3135 | No text annotation | homologous J4_8P9A_020 J4_37757.1 | |
| J4_8ZGY_010 | 1/S2/99:107, 1/S2/307:309, 1/S2/357:361, 1/S2/383:384 | No text annotation | ||
| J4_8ZGY_011 | 1/S2/622:624, 1/S2/975:980, 1/S2/1021:1032, 1/S2/1103:1104 | No text annotation | ||
| J5_8ZGY_001 | 1/LA/20:22, 1/LC/35:42, 1/LC/102:107, 1/LC/115:116, 1/LC/137:139 | No text annotation | homologous J5_8CRE_001 NA | |
| J5_8ZGY_002 | 1/LA/657:662, 1/LA/798:801, 1/LA/940:943, 1/LA/1374:1375, 1/LA/1430:1436 | No text annotation | homologous J5_8CRE_002 NA | |
| J5_8ZGY_003 | 1/LA/674:677, 1/LA/701:705, 1/LA/712:720, 1/LA/748:750, 1/LA/781:786 | No text annotation | homologous J5_8P9A_012 J5_56629.1 | |
| J5_8ZGY_004 | 1/LA/1905:1913, 1/LA/1937:1938, 1/LA/2108:2109, 1/LA/2113:2121, 1/LA/2330:2332 | No text annotation | homologous J5_8CRE_004 NA | |
| J5_8ZGY_005 | 1/LA/2398:2405, 1/LA/2814:2822, 1/LA/2866:2875, 1/LA/2950:2956, 1/LA/2974:2979 | No text annotation | ||
| J5_8ZGY_006 | 1/LA/2415:2418, 1/LA/2610:2613, 1/LA/2626:2627, 1/LA/2649:2650, 1/LA/2797:2803 | No text annotation | homologous J5_8P9A_015 J5_96125.1 | |
| J5_8ZGY_007 | 1/S2/31:37, 1/S2/471:479, 1/S2/509:514, 1/S2/543:547, 1/S2/591:595 | No text annotation | ||
| J5_8ZGY_008 | 1/S2/31:41, 1/S2/466:479, 1/S2/509:514, 1/S2/543:547, 1/S2/591:595 | No text annotation | ||
| J5_8ZGY_009 | 1/S2/31:41, 1/S2/466:479, 1/S2/509:516, 1/S2/536:547, 1/S2/591:595 | No text annotation | ||
| J5_8ZGY_010 | 1/S2/54:57, 1/S2/90:97, 1/S2/386:388, 1/S2/409:411, 1/S2/422:426 | No text annotation | ||
| J5_8ZGY_011 | 1/S2/124:143, 1/S2/172:182, 1/S2/203:204, 1/S2/263:268, 1/S2/287:293 | No text annotation | ||
| J5_8ZGY_012 | 1/S2/636:642, 1/S2/692:700, 1/S2/738:744, 1/S2/807:817, 1/S2/854:860 | No text annotation | ||
| J6_8ZGY_001 | 1/LA/22:27, 1/LA/58:68, 1/LA/75:79, 1/LA/106:110, 1/LA/321:331, 1/LC/32:35 | No text annotation | ||
| J6_8ZGY_002 | 1/LA/2415:2418, 1/LA/2610:2613, 1/LA/2626:2627, 1/LA/2649:2652, 1/LA/2753:2764, 1/LA/2792:2803 | No text annotation | ||
| J7_8ZGY_001 | 1/LA/948:953, 1/LA/966:967, 1/LA/1113:1116, 1/LA/1140:1145, 1/LA/1156:1160, 1/LA/1337:1338, 1/LA/1364:1369 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8ZGY_011 | No text annotation | ||
| J4_8ZGY_012 | tRNA junction |
Coloring options: