HL_8ZGY_014

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

8ZGY|1|LA|C|647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGY_014 not in the Motif Atlas

Homologous match to HL_8CRE_013

Geometric discrepancy: 0.0682

The information below is about HL_8CRE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28252.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

140

Unit IDs

8ZGY|1|LA|U|639
8ZGY|1|LA|C|640
8ZGY|1|LA|U|641
8ZGY|1|LA|U|642
8ZGY|1|LA|G|643
8ZGY|1|LA|A|644
8ZGY|1|LA|A|645
8ZGY|1|LA|A|646
8ZGY|1|LA|C|647
8ZGY|1|LA|A|648

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LE

Large ribosomal subunit protein uL3

Chain Lc

Large ribosomal subunit protein uL15

Chain Lg

Large ribosomal subunit protein eL32