HL_8ZGY_016

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGY_016 not in the Motif Atlas

Homologous match to HL_8P9A_128

Geometric discrepancy: 0.0859

The information below is about HL_8P9A_128

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8ZGY|1|LA|U|706
8ZGY|1|LA|G|707
8ZGY|1|LA|A|708
8ZGY|1|LA|A|709
8ZGY|1|LA|A|710
8ZGY|1|LA|G|711

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LN

Large ribosomal subunit protein eL13A

Chain LS

Large ribosomal subunit protein eL18A

Chain Lc

Large ribosomal subunit protein uL15

Chain Lk

Large ribosomal subunit protein eL36A