3D structure

PDB id
8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S ribosome with P/E tRNA and mRNA of WNV
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CGAAAUG
Length
7 nucleotides
Bulged bases
8ZGY|1|LA|A|1024, 8ZGY|1|LA|A|1025, 8ZGY|1|LA|A|1026, 8ZGY|1|LA|U|1027
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8ZGY|1|LA|C|1022
8ZGY|1|LA|G|1023
8ZGY|1|LA|A|1024
8ZGY|1|LA|A|1025
8ZGY|1|LA|A|1026
8ZGY|1|LA|U|1027
8ZGY|1|LA|G|1028

Current chains

Chain LA
25S rRNA (3393-MER)

Nearby chains

Chain LM
Large ribosomal subunit protein uL5B
Chain SE
Small ribosomal subunit protein uS19

Coloring options:

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