HL_8ZGY_024

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

8ZGY|1|LA|U|1080

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGY_024 not in the Motif Atlas

Homologous match to HL_8P9A_136

Geometric discrepancy: 0.3019

The information below is about HL_8P9A_136

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

8ZGY|1|LA|C|1075
8ZGY|1|LA|U|1076
8ZGY|1|LA|U|1077
8ZGY|1|LA|A|1078
8ZGY|1|LA|A|1079
8ZGY|1|LA|U|1080
8ZGY|1|LA|U|1081
8ZGY|1|LA|G|1082

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LG

Large ribosomal subunit protein uL18

Chain LV

Large ribosomal subunit protein eL21A

Chain Ld

Large ribosomal subunit protein eL29