HL_8ZGY_029

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUGAUAUGAUG

Length

11 nucleotides

Bulged bases

8ZGY|1|LA|A|1349, 8ZGY|1|LA|U|1350, 8ZGY|1|LA|A|1351, 8ZGY|1|LA|U|1352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZGY|1|LA|U|1346
8ZGY|1|LA|U|1347
8ZGY|1|LA|G|1348
8ZGY|1|LA|A|1349
8ZGY|1|LA|U|1350
8ZGY|1|LA|A|1351
8ZGY|1|LA|U|1352
8ZGY|1|LA|G|1353
8ZGY|1|LA|A|1354
8ZGY|1|LA|U|1355
8ZGY|1|LA|G|1356

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LF

Large ribosomal subunit protein uL4A

Chain LH

Large ribosomal subunit protein eL6B

Chain LS

Large ribosomal subunit protein eL18A

Chain Lg

Large ribosomal subunit protein eL32