HL_8ZGY_031

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AUGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGY_031 not in the Motif Atlas

Homologous match to HL_8CRE_030

Geometric discrepancy: 0.065

The information below is about HL_8CRE_030

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8ZGY|1|LA|A|1461
8ZGY|1|LA|U|1462
8ZGY|1|LA|G|1463
8ZGY|1|LA|A|1464
8ZGY|1|LA|G|1465
8ZGY|1|LA|A|1466
8ZGY|1|LA|A|1467
8ZGY|1|LA|C|1468
8ZGY|1|LA|U|1469

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LR

Large ribosomal subunit protein uL22A

Chain LT

Large ribosomal subunit protein eL19A

Chain Lf

Large ribosomal subunit protein eL31A