HL_8ZGY_037

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

8ZGY|1|LA|U|1686

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGY_037 not in the Motif Atlas

Homologous match to HL_8P9A_148

Geometric discrepancy: 0.1103

The information below is about HL_8P9A_148

Detailed Annotation

Pseudoknot geometry

Broad Annotation

Pseudoknot geometry

Motif group

HL_22758.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8ZGY|1|LA|G|1679
8ZGY|1|LA|U|1680
8ZGY|1|LA|U|1681
8ZGY|1|LA|A|1682
8ZGY|1|LA|U|1683
8ZGY|1|LA|C|1684
8ZGY|1|LA|U|1685
8ZGY|1|LA|U|1686
8ZGY|1|LA|U|1687

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LT

Large ribosomal subunit protein eL19A

Chain LW

Large ribosomal subunit protein eL22A