3D structure

PDB id
8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S ribosome with P/E tRNA and mRNA of WNV
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CGCAGCAG
Length
8 nucleotides
Bulged bases
8ZGY|1|LA|C|1845, 8ZGY|1|LA|G|1847, 8ZGY|1|LA|A|1849
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8ZGY_041 not in the Motif Atlas
Homologous match to HL_8CRE_040
Geometric discrepancy: 0.0556
The information below is about HL_8CRE_040
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_89567.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
8

Unit IDs

8ZGY|1|LA|C|1843
8ZGY|1|LA|G|1844
8ZGY|1|LA|C|1845
8ZGY|1|LA|A|1846
8ZGY|1|LA|G|1847
8ZGY|1|LA|C|1848
8ZGY|1|LA|A|1849
8ZGY|1|LA|G|1850

Current chains

Chain LA
25S rRNA (3393-MER)

Nearby chains

Chain LF
Large ribosomal subunit protein uL4A
Chain LR
Large ribosomal subunit protein uL22A
Chain Ll
Large ribosomal subunit protein eL37A
Chain Ln
Large ribosomal subunit protein eL39

Coloring options:


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