HL_8ZGY_042

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

8ZGY|1|LA|C|1865

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGY_042 not in the Motif Atlas

Homologous match to HL_8P9A_153

Geometric discrepancy: 0.1678

The information below is about HL_8P9A_153

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

8ZGY|1|LA|U|1861
8ZGY|1|LA|G|1862
8ZGY|1|LA|A|1863
8ZGY|1|LA|A|1864
8ZGY|1|LA|C|1865
8ZGY|1|LA|A|1866
8ZGY|1|LA|G|1867

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LT

Large ribosomal subunit protein eL19A