HL_8ZGY_043

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8ZGY|1|LA|U|1924

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGY_043 not in the Motif Atlas

Homologous match to HL_8CRE_042

Geometric discrepancy: 0.0609

The information below is about HL_8CRE_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8ZGY|1|LA|C|1922
8ZGY|1|LA|U|1923
8ZGY|1|LA|U|1924
8ZGY|1|LA|C|1925
8ZGY|1|LA|G|1926
8ZGY|1|LA|G|1927

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain Lp

Large ribosomal subunit protein eL41A

Chain Lr

Large ribosomal subunit protein eL43A

Chain S2

Small subunit ribosomal RNA; SSU rRNA