HL_8ZGY_047

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGY_047 not in the Motif Atlas

Homologous match to HL_8P9A_159

Geometric discrepancy: 0.0938

The information below is about HL_8P9A_159

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

8ZGY|1|LA|A|2219
8ZGY|1|LA|G|2220
8ZGY|1|LA|A|2221
8ZGY|1|LA|A|2222
8ZGY|1|LA|A|2223
8ZGY|1|LA|U|2224

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain Lk

Large ribosomal subunit protein eL36A

Chain Lq

Large ribosomal subunit protein eL42A