HL_8ZGY_048

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGAGUAACUAUGACUCU

Length

17 nucleotides

Bulged bases

8ZGY|1|LA|A|2254, 8ZGY|1|LA|A|2255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZGY|1|LA|G|2249
8ZGY|1|LA|G|2250
8ZGY|1|LA|A|2251
8ZGY|1|LA|G|2252
8ZGY|1|LA|U|2253
8ZGY|1|LA|A|2254
8ZGY|1|LA|A|2255
8ZGY|1|LA|C|2256
8ZGY|1|LA|U|2257
8ZGY|1|LA|A|2258
8ZGY|1|LA|U|2259
8ZGY|1|LA|G|2260
8ZGY|1|LA|A|2261
8ZGY|1|LA|C|2262
8ZGY|1|LA|U|2263
8ZGY|1|LA|C|2264
8ZGY|1|LA|U|2265

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain Tb

Transfer RNA; tRNA

Chain mR

RNA (5'-R(P*GP*AP*UP*CP*CP*UP*UP*AP*AP*C)-3')