HL_8ZGY_050

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8ZGY|1|LA|A|2371, 8ZGY|1|LA|A|2372, 8ZGY|1|LA|C|2373

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGY_050 not in the Motif Atlas

Homologous match to HL_8CRE_049

Geometric discrepancy: 0.049

The information below is about HL_8CRE_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8ZGY|1|LA|G|2368
8ZGY|1|LA|G|2369
8ZGY|1|LA|G|2370
8ZGY|1|LA|A|2371
8ZGY|1|LA|A|2372
8ZGY|1|LA|C|2373
8ZGY|1|LA|G|2374
8ZGY|1|LA|G|2375
8ZGY|1|LA|G|2376
8ZGY|1|LA|C|2377

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LE

Large ribosomal subunit protein uL3

Chain Lg

Large ribosomal subunit protein eL32