HL_8ZGY_053

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

8ZGY|1|LA|G|2617

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGY_053 not in the Motif Atlas

Homologous match to HL_8P9A_165

Geometric discrepancy: 0.0591

The information below is about HL_8P9A_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8ZGY|1|LA|C|2615
8ZGY|1|LA|U|2616
8ZGY|1|LA|G|2617
8ZGY|1|LA|G|2618
8ZGY|1|LA|G|2619
8ZGY|1|LA|G|2620
8ZGY|1|LA|C|2621
8ZGY|1|LA|G|2622
8ZGY|1|LA|G|2623

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LL

Large ribosomal subunit protein uL16

Chain Ld

Large ribosomal subunit protein eL29