HL_8ZGY_055

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGY_055 not in the Motif Atlas

Homologous match to HL_8P9A_167

Geometric discrepancy: 0.2572

The information below is about HL_8P9A_167

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8ZGY|1|LA|A|2672
8ZGY|1|LA|A|2673
8ZGY|1|LA|C|2674
8ZGY|1|LA|A|2675
8ZGY|1|LA|G|2676
8ZGY|1|LA|A|2677
8ZGY|1|LA|A|2678
8ZGY|1|LA|A|2679
8ZGY|1|LA|U|2680

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LM

Large ribosomal subunit protein uL5B